Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1354 ATGGTGTTTTCAGATAACATCTTTTATGAAGGACACCAAATTTGGAATCCGAATGCTAAAGTTATCATGCTTTGTAAACAGTTACAGATTGTTCATCATGTAATAATGACTGGTGCGCCAATTCAGAACAAGCTGGCTGAGCTGTGGTCTTTGTTCGATTTTGTCTTCCTTGGGAAGTTGGGAGTGTTGCCTGTGTTTGAAGCAGAAGTTGCAGTTCCCATATCTGTTGCTGGCTATGCCAATGCCTCTCCATTACAAACTCACCGAGTCACCGATGGCAGAGTCAAACCTTCCGATACTAGCACGACTAGGAGGAGCTCATCATGGTCCTTTGGTTTTCTCGTCTTGATTCTTACTCCCGTTGCAGCGGCCATCTTTCTCTACCAACTCGACTCCTTTGATCCAGCTTCTCTGCCCACTCACGAGTTTTCACAGGAACCCATGCCTGTGCCGAAGCTCAACCCTCGTATGCTGCAAGGTTCTGAGATGATTGGGCAGGGGAATCTGTTGGGCCCAGAGGACATTGCCTATGACGCCAACTCACACCTAATCTACACAGGCTGTGCTGATGGCTGGGTCAAGCGAGTCACCTTGAACGAGTCGGCTGCCAACTCGGTCGTCCATAACTGGGCCTTCACCGGTGGAAGACCTCTCGGCGTCGCTCTCGGTCGAGTTGGCGAAGTTCTCGTCGCCGATGCCGAAAAGGGTCTATTGGAGATAAGTGGAGATGGTGTGATGAAACTATTGACCGATGAGGCTGAAGGCCTAAAATTCAAACAAACGAACGCTGTAGATGTAGCTGTTGATGGTATGATTTATTTTACAGATGCTTCCTATAAATACGGGTTGATAGAGTTCATATGGGAGATATTGGAGGTTAGGCCCCATGGTAGACTACTGAGCTTTGATCCATCGACTCAAGAGACTATAGTGCTTTTACGTGATCTTTACCTTGCTAATGGTGTTGTCGTCTCACCTGATCAGACTTCTGTGGTCTTCTGCGAAACTCTCATGGGACTAAAGGTCTTTGGGACTTGGCACTCAAGTATCCTTCAATTCGAAAAGTTATGGCAATCTTGGAGAGGTACATTGGAAGGCCACATATCGAGAAAAATGGTGGGATTTTGA 1128 0.4699 MVFSDNIFYEGHQIWNPNAKVIMLCKQLQIVHHVIMTGAPIQNKLAELWSLFDFVFLGKLGVLPVFEAEVAVPISVAGYANASPLQTHRVTDGRVKPSDTSTTRRSSSWSFGFLVLILTPVAAAIFLYQLDSFDPASLPTHEFSQEPMPVPKLNPRMLQGSEMIGQGNLLGPEDIAYDANSHLIYTGCADGWVKRVTLNESAANSVVHNWAFTGGRPLGVALGRVGEVLVADAEKGLLEISGDGVMKLLTDEAEGLKFKQTNAVDVAVDGMIYFTDASYKYGLIEFIWEILEVRPHGRLLSFDPSTQETIVLLRDLYLANGVVVSPDQTSVVFCETLMGLKVFGTWHSSILQFEKLWQSWRGTLEGHISRKMVGF* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1354 375 Pfam Strictosidine synthase-like, N-terminal 158 196 - -
Vvi4g1354 375 PANTHER STRICTOSIDINE SYNTHASE-RELATED 118 339 - -
Vvi4g1354 375 Pfam SNF2-related domain 9 85 IPR000330 GO:0005524|GO:0140658
Vvi4g1354 375 SUPERFAMILY Calcium-dependent phosphotriesterase 158 338 - -
Vvi4g1354 375 Gene3D - 6 97 IPR038718 -
Vvi4g1354 375 FunFam Uncharacterized protein 155 349 - -
Vvi4g1354 375 Pfam Strictosidine synthase 262 339 IPR018119 GO:0009058|GO:0016844
Vvi4g1354 375 Gene3D - 157 341 IPR011042 -
Vvi4g1354 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 86 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1354 Vvi-Chr4 20426687 20444957 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi4g1354 Str_synth 1.6e-24 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1354 - - vvi:100259998 471.47