Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1338 ATGAGCAAGAGGAGCACCATTGTGGTTTCTTCATCGGAGGATGAAGAAAAAGATGGTTCATTCAATTCAAAGCGGGGTTATTCGAGGTGCAAATCGAGGCGTAAAAACCCTAGCGGAGCGAAGAAGGCTCGGATTTCTGGTTCTCAGTCTCGCTTGTGTAGAGATTCCAGTGTGTTCGATGAGATGAGATTGTTTTGTGAAGAATTTGGTGAAGGGCTTACAGGTTTCAAGGTATCTGCTGGTTCTAGTAGGTGTGGAGGAAAGGAGTTATGGGTTGATAAATATAAACCTCGATCCTTGGAGGAACTTGCTGTTCACAAGAAAAAGGTTGAAGAAGTTACAGTATGGTTTGAGAAAAGATTGAGAACTTCAAGGGAAGAAATGTGCAATCTTCTTGTCATCACTGGACAAGCTGGAGTTGGGAAATCTGCAACTATCCATGCCATTGCGTCTCATCTTGGAGCGAGATTATGTGAATGGAACACGCCTATTCCTACTATATGGCAAGAACATCTGCATAACACAAATTCAGGGATACGCTACACATCTAAGTTGGATGAGTTTGAAAGTTTTGTTGAGAGGATGAGGAAATATGGTTTAATCCCACCGTCCTTTGCTGGAGAATCCAAATCATCCGTCATACTTTTAATTGATGATCTTCCTGTGACCAATGGAAATGCTTCTTATAGAAGACTTCGCAACTGCTTGCAACTTCTTGCGCAATCAACTCAGATTCCAACGGCTATATTGATCACCGATTATGGTAAAGCTGACTCTGCAGACAACATTGCCACCGCCCGTTGCTTGGAAGAACTTCAGTTGTCTCTGGAGAATGCTGGGGCTTGTAAGATTGCTTTCAATCCCATCACAAGTAACTCCATTAAGAAGACACTTTCTAAAATATGCAGACAAGAGCAGTGTGGTGTGACTGCTGATCAGATTGATCTAATAGCAAGATCTAGCGGAGGTGATGTCAGACATGCAATTACATCTTTACAATACTTCTGTCTGAAACCAGACCCGATGCTTTCTTTATCTTTTTCCGAGCCTGCCCGCACTTATTCGAAAGAAAAATCAGATGAGCTCAATCCTTTGGATGATGGATTTTCTTTACCCTTTGGCAGAGATGAAACACTTTCCCTATTTCATGCCCTGGGAAAATTTCTGCATAACAAAAGAGAGAGTGAAAATGCAATTGCCCCAGGCCAGGAAGCATTTCTTGTGAGGGAAAGATTGACAAGATTACCGTTAAAAATGGATGCTCCAGAAAGGGTTCTTTGTCAAGCACATGTGCAAGCAAGACCTGTTGTTGATTTTCTGCATGAAAATGCCACAAGTTATGAGGCAGGGAATGTTCTACAATCAGCTGCTGCTTCAGTTGCTGCCCGTGGAGTGCTATTTGGAAATTCACACCCATTGGCTTCCAGGTGGCATGCTATTCGCCGCCCAAAGCTCTGGCAGGTTGAGCAATCCTCACTACATAATAAGTGTGAGATACTAGGCCAGAGATTGGTTGCTTTGAGCACATCTAATGTATCAGTTATTGCTACTGAGTATATACCTATATTTAAATGGCTTAGATATGGAGCATCTGGGGGTTTTGAAGATTATCAGGCATTAATACAGGGCAATGAGACAGAACTTGATGACAATGATAGTATGATTTTGGATGAAAAGGAAAATGAGATTTCTGATGATGAAATAGAAGATTGGTAA 1716 0.419 MSKRSTIVVSSSEDEEKDGSFNSKRGYSRCKSRRKNPSGAKKARISGSQSRLCRDSSVFDEMRLFCEEFGEGLTGFKVSAGSSRCGGKELWVDKYKPRSLEELAVHKKKVEEVTVWFEKRLRTSREEMCNLLVITGQAGVGKSATIHAIASHLGARLCEWNTPIPTIWQEHLHNTNSGIRYTSKLDEFESFVERMRKYGLIPPSFAGESKSSVILLIDDLPVTNGNASYRRLRNCLQLLAQSTQIPTAILITDYGKADSADNIATARCLEELQLSLENAGACKIAFNPITSNSIKKTLSKICRQEQCGVTADQIDLIARSSGGDVRHAITSLQYFCLKPDPMLSLSFSEPARTYSKEKSDELNPLDDGFSLPFGRDETLSLFHALGKFLHNKRESENAIAPGQEAFLVRERLTRLPLKMDAPERVLCQAHVQARPVVDFLHENATSYEAGNVLQSAAASVAARGVLFGNSHPLASRWHAIRRPKLWQVEQSSLHNKCEILGQRLVALSTSNVSVIATEYIPIFKWLRYGASGGFEDYQALIQGNETELDDNDSMILDEKENEISDDEIEDW* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1338 571 MobiDBLite consensus disorder prediction 1 47 - -
Vvi4g1338 571 Pfam Rad17 P-loop domain 87 259 - -
Vvi4g1338 571 CDD HLD_clamp_RFC 289 333 - -
Vvi4g1338 571 MobiDBLite consensus disorder prediction 9 24 - -
Vvi4g1338 571 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 443 531 IPR004582 GO:0006281
Vvi4g1338 571 Gene3D - 88 270 IPR027417 -
Vvi4g1338 571 FunFam RAD17 checkpoint clamp loader component 88 269 - -
Vvi4g1338 571 Gene3D - 291 343 - -
Vvi4g1338 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 337 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1338 Vvi-Chr4 20299787 20306280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1338 91 333 Core DNA Replication Machinery Family AT1G21690 25.101 3.59e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1338 K06662 - vvi:100255852 1124.38