Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1335 ATGGAAGTCCAAGCCTCAACCTCAGCCTCTGCACCAGCACCAACTCCAGCACCACTAGTTGTAAATGCAGAATACTACAAAGAAATCGAAAGGGCTCGTAGATACCTCCGTGCTCTCATTTCCAGCAAAAACTGTGCACCCATGATGCTCCGTCTAGCGTTTCATGATGCAGGCACTTATGATGCTCTCACAAAGACAGGGGGCCCAAATGGCTCCATCAGAAACCCACAAGAGCTTAATCATTCTGCAAATAGGGGTTTGGAAACGGCAGTTGATCTTTGCGAGAAGGTGAAAAGGAAGCATCCTTGCATTACATATGCTGACCTTTACCAGCTTGCTGGTGTTGTTGCAGTTGAGGTTACTGGAGGCCCCACTATTCACTTCGTCCCTGGTAGACAGGACTCTTTGTCTTCACCAAAAGAAGGGCTCCTCCCAGATGCTAACAAAGGTGCTGACCATTTAAGGTCGGTCTTTAACCGGATGGGTCTTGAGGACAAGGATATTGTGGCCCTCTCCGGAGGTCATACATTGGGAGGGGCACATAAGCAAGTTTCAGGCTTTGATGGCAAGTGGACAGAGGAGCCCTGGAAGTTCGACAATTCGTATTTCAAGGAGCTTTTGAAATCATCAACCAAGTTTCCTACACCTAGTAACCCTCCAACAGGGTATTCACAGCAGAAACCTTCTTCTTCAGCTGCGGGCGAGGATTCAACAGGGAGGCGATTGTTTATATTTTCCACAGACCAAGCATTAATAAAGGATCCTAAATTCCTAGAATATGTTATGTTGTATGAACAGGATGAGGAGGCTTTCTTCAGAGATTATGCGGCATCCCACAAGAAGCTTTCGGAGCTAGGGTTTGTTCCACCTACATGGACTTCCAGGGTAATCACAGCTGTGAAGAACAGTTCAACCATGGCAAAAACTGCTGCAGGAGTTGCTTTTGCGACAACTGCTATAGCCATTACTTTCTACTATAGACAAAGAAGTCAAAGGAAAGAGGAGTAA 1008 0.4643 MEVQASTSASAPAPTPAPLVVNAEYYKEIERARRYLRALISSKNCAPMMLRLAFHDAGTYDALTKTGGPNGSIRNPQELNHSANRGLETAVDLCEKVKRKHPCITYADLYQLAGVVAVEVTGGPTIHFVPGRQDSLSSPKEGLLPDANKGADHLRSVFNRMGLEDKDIVALSGGHTLGGAHKQVSGFDGKWTEEPWKFDNSYFKELLKSSTKFPTPSNPPTGYSQQKPSSSAAGEDSTGRRLFIFSTDQALIKDPKFLEYVMLYEQDEEAFFRDYAASHKKLSELGFVPPTWTSRVITAVKNSSTMAKTAAGVAFATTAIAITFYYRQRSQRKEE* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1335 335 PRINTS Haem peroxidase superfamily signature 46 60 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Haem peroxidase superfamily signature 104 121 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Haem peroxidase superfamily signature 122 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Haem peroxidase superfamily signature 167 182 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 ProSitePatterns Peroxidases active site signature. 46 57 IPR019794 GO:0004601
Vvi4g1335 335 FunFam Cytosolic ascorbate peroxidase 32 149 - -
Vvi4g1335 335 Gene3D Peroxidase, domain 2 145 279 - -
Vvi4g1335 335 PRINTS Plant ascorbate peroxidase signature 46 61 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Plant ascorbate peroxidase signature 78 102 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Plant ascorbate peroxidase signature 183 207 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Plant ascorbate peroxidase signature 143 160 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Plant ascorbate peroxidase signature 122 134 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Plant ascorbate peroxidase signature 25 45 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Plant ascorbate peroxidase signature 64 74 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Plant ascorbate peroxidase signature 103 121 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PRINTS Plant ascorbate peroxidase signature 161 182 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 Gene3D - 33 286 - -
Vvi4g1335 335 Pfam Peroxidase 36 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 ProSitePatterns Peroxidases proximal heme-ligand signature. 167 177 IPR019793 -
Vvi4g1335 335 ProSiteProfiles Plant heme peroxidase family profile. 37 308 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 20 293 IPR044831 GO:0004601|GO:0034599
Vvi4g1335 335 MobiDBLite consensus disorder prediction 212 236 - -
Vvi4g1335 335 SUPERFAMILY Heme-dependent peroxidases 25 296 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi4g1335 335 CDD ascorbate_peroxidase 20 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1335 Vvi-Chr4 20281250 20283702 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1335 32 286 Peroxidase AT4G31760 28.571 1.26e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1335 K00434 - vvi:104879121 645.58