Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1331 ATGGGTAGGTCTCCCTGTTGTGAGAAAGCTCACACTAACAAAGGTGCCTGGACTAAAGAAGAGGATGACAGGCTTATCGCCCACATCCAAGCTCACGGTGAGGGCTGCTGGCGCTCCCTTCCCAAAGCTGCTGGACTTCTCCGTTGCGGCAAAAGCTGCCGTCTCCGGTGGATTAATTATCTGCGCCCTGATCTTAAGCGCGGCAACTTCACTGATGAAGAGGATGAGCTCATTATCAAGCTACACAGCCTCCTTGGTAACAAGTGGTCTCTTATAGCCGGAAGATTACCGGGGAGAACTGACAACGAGATCAAAAACTACTGGAACACCCATATAAGGAGGAAGCTACTGAGCAGAGGGATTGACCCCTTGACGCATCGACCCATCAATGAGGCAGCTGTGGACGTAGCCACCGTCTCTTTTGGTGGAGTCCTGAAGAAGGAAGAGGTGATGAGTAGTGGGTTTGGATGCAAAAGCCGAAACCCAGATGAAGAAAACTGTCCAGACTTGAATCTTGAGCTCAGAATAAGCCCACCCCATCATCACCCCTCTCCGCCAGTACTGGACAGCAGAGAAAGGAGGATGCTTTGTTTCTACTGCAGCCTGGGATTAGAGAAGAGCAAGGAGTGCAGTTGCAGCAGCGGGAGCGGTAATGGCAGCAGTGATGATTTCTTGGGTATGAATAATGGTGTTTTGGATTACAGAAATTTGGAGATGAAAAGAGATTGA 729 0.4993 MGRSPCCEKAHTNKGAWTKEEDDRLIAHIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPLTHRPINEAAVDVATVSFGGVLKKEEVMSSGFGCKSRNPDEENCPDLNLELRISPPHHHPSPPVLDSRERRMLCFYCSLGLEKSKECSCSSGSGNGSSDDFLGMNNGVLDYRNLEMKRD* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1331 242 CDD SANT 69 112 IPR001005 -
Vvi4g1331 242 CDD SANT 16 61 IPR001005 -
Vvi4g1331 242 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 146 - -
Vvi4g1331 242 Gene3D - 69 116 - -
Vvi4g1331 242 FunFam MYB transcription factor MYB48 69 162 - -
Vvi4g1331 242 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi4g1331 242 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi4g1331 242 SMART sant 13 63 IPR001005 -
Vvi4g1331 242 SMART sant 66 114 IPR001005 -
Vvi4g1331 242 FunFam MYB-related transcription factor 13 66 - -
Vvi4g1331 242 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vvi4g1331 242 Gene3D - 14 66 - -
Vvi4g1331 242 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi4g1331 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi4g1331 242 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi4g1331 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1331 Vvi-Chr4 20252107 20252917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1331 1 240 MYB Transcription Factor Family AT4G38620 57.045 1.97e-101 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi4g1331 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1331 K09422 - vvi:100245558 482.256