Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1328 ATGGGGTCACACCTGAGAAGGGTCTTCAACAGAATCTCTGGTTTTGTCAGTCCTTGGAGAAGAAACCAAGCTCCTCATGGTCGAAGAATTTTCCATAGGGAAGTCCAACAAGAAGAATTCCAGTATCCAAGTAACAGTTGTCTCTCATCCTACTACAGTGTCTTCGTTGCTCGCCTTGCTATCATGGTCATGCTAGCTATTTTAATTGGACTGCTAACAATCTTGACATGGCACTTCACAAGGATCTATACAACGAAATCCATAAACAGCTTAGCATACGGCCTTCGCTATGAACTTCTACAGCGTCCCATATTAAGAATGTGGAACATCTTGAATTCTACTGTTGAAATAACAACAGCCCAGGTTAAGCTGTCAGAGTATGTAATCAAACGGTATAGCAAACCCACTACTCAAGCACAACAAGTTGAGCTGTATGAAGTGATGAGGGATGTAACATGGGCACTATTTGCAAGCCGTAAAGCTCTCAATGCGATAACCATAAACTACAGGAACGGTTTTGTCCAGGCTTTTCATAGAGATCACAGGAGTAACAATACATTCTACATCTTCTCTGATCTTGTCAATTATTCAATCAGTGGGTCTTACAATTCCAATACACTGTCATCTCATCAAGGGTGGAATGATCAATCCATACACAGTAACATTTCAGCAATTTGGTATCATGTGCCACTAGATCCTGTATCTGGTGAGAGAATAGGAAAGCCAAAAGCAATCCCTCCAGATGATCAAATCAACATTGCAGGCCTATCACAAGTTCCCGATGGTGTAGCTTCCTGGCATGTAGCAGTTAGCAAGTATACAGATTCACCGTTACTTTCAGCAGCATTGCCAGTTTGGGATCCATCCAATCAAAGTATAGTGGCTGTTGTAGGTGTCACAACAGCACTCTATAGTGTCGGCCAGCTGATGAAAGAACTTGTGGAAGTTCACAGTGGGCACATTTATTTGACCTCTCAAGAGGGATATTTACTAGCTACTTCAACAAATGCTCCTTTGTTAACAAATTCATCAACTGGGCCGAAGCTTATGCTGGCTATCGATTCTGAGGATCGAGTCATACGCTTGGGAGCTGAGTGGCTCCAAAGAACCTATGGCTACAAATTTCCTCCAAGTCATGTGGTTCACGTGGAGAATGCCAAGCTTGGTCATGAGCATTATTATATTGACTCGTTTTTTCTAAATTTAAAGAGACTTCCCATGGTGGGGGTTATCATCATTCCAAGAAAATACATAATGGGGAAGGTCGAGGAGAGAGCCCTCAAAACATTGATCATACTAATATCTGCATCTCTGTGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTGTCAAAAGAAATGAAACTAAGAGCAGAGCTGATAAGCCATCTTGATGCAAGAAGGCGGGCTGAGGCATCAAGCAACTATAAAAGCCAGTTTTTAGCAAACATGAGTCATGAACTGAGAACACCTATGGCTGCAGTGATTGGGTTGCTGGACATTCTTATATGCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACCCAGATTCGTAAATGCTCAACTGCTCTACTCCGACTTCTAAACAACATTTTGGACATCAGCAAGGTGGAATCTGGGAAACTGGTTCTGGAAGATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACAATGTGGAGACTGTTCTAGATCTCTCAGATGATATGCCAAAGTTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTTGCAAATCTAATCAGCAATTCTATCAAGTTTACAACATCGGGTCACATTATTCTGCGAGGATGGTGTGAGAATTCAAATGCCTATGGTAACTCTGGGAAGTTTCCCCTCAATCAGAAGGCATCACGATCTGCACTTAAAGCAAAGTTCAAGCAACATCGGAACCATGCCAAGAGGGCTTGCAAGAAAAACAACAAGATGACTCTTTGGTTTGAAGTGGATGACACTGGCTGTGGAATTGATCCAAGCAAATGGGAGTCAGTATTTGAAAGCTTTGAGCAGGCTGACCCCTCAACAACTCGAACTCATGGTGGCACCGGTCTTGGCCTATGCATTGTACGAACTTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTGAAGAAGAATAGTCCAGGGACTATAATGCAACTCTACTTGCTTCTCAATACACCTATAGAGGGAGCAGGACAGCATTGTCAACTAGAATTTGGGGAGCATAGCCTAGTAGTACTGCTTGCACTAAGTGGTAGTATGGGTAGGTTGATTATGTCCCAGTGGTTACGGAAGAATGGTGTGTTCACTTGGGAAGCATCAGAATGGAATGAACTGACTCAAATTCTGGGGCAACTTTTTCGAGCCAGAAGTTCAGTTCCTAATGGTGGCCTTGTTATGCAATGTTTACCAAGTGAACCTTTGAAAACTGAAGCACCAAACATACAAGACACAAGGGCCTCAGTTTTTGTCATAATTGTTGACATAGGGCTACTGGACTGGAGCACAGATATATGGAGGGAACAGCTTAACTTCCTTGACAAATACCATGGAAAAGCAAGGTTTGCATGGATACTAAACCATGATACTTCCAATTTCATAAAGATGGAGCTCCGCAGGAAAGGGCATTTATTAATGGTTAATAAACCATTATACAAGTCAAAAGTGGTGCATATTTTGGAAGCTGTCATAAAGGGGAGGGATCTTGAAATGCAAGGGAGAATTTTGAATGGTTTGAAAAGTACAAGAATAGAAGGTAATTTGCATGAATCTCTTGAAATTGATTCTACCCATTTTGAGGAGGTTCCCAGCTCTGATGATTCTGATAGGTCTGAAATGGGTAGTCATAAGTCTATCAATGCATATCATATTGCAGAAAAACAAAAAGACAGGATCAGAAAACCTTGTCCATCGCAATACCAGACAGCTAACAGTTGTTTAGTTGAATTTACTCAAGTATATTCAACAGAAAATAATTTGAGGACAGAGGATCCACATCAAATAAGGCCAAATTCACATGATGCTGGAAATGAAGGACACAAGTTGATGTGCAACAAGAGCACATCCCCTTTAACAGAAGCTGAATGTGAAAATTGTAGAGGCCAAGAACAACATTTGATCAGCACTTGTCCGAAAGAGCATGGTAATTCTTATTCAGGAAAGACTGTGAATGGACAGAAATCTCTAGAAGGCTTACGAATACTGCTTGCTGAAGATACACCAGTTCTCCAGAGAGTTGCAACCATAATGCTTGAAAAAATGGGAGCAACAGTCATAGCTGTAGGAGATGGACTGCAGGCAGTAGATGCTTTGAAATGTATGCCTGGTGCAGAGGAGAGTAGAGGGAAATGTCTTTTGCAAGATGGCAGAACAAGGTGTCAAACACAAATCCATGATTCCCTGCCATATGACTTGATCCTAATGGATTGTCAAATGCCCAAGATGGATGGTTATGAAGCAACAAAAACAATAAGAAAGTCAGAAGAGGGAACAAGTTTGCACATTCCCATTGTTGCACTGACAGCCCATGCAATGTCATCAGATGAAGCCAAATGTTTGGAGGTTGGTATGGATGCTTATCTTACAAAGCCAATTGACTACAGGCTGATGGTGTCTACCATTCTTTCACTTACAAAAAGAATGGCCTAA 3708 0.4148 MGSHLRRVFNRISGFVSPWRRNQAPHGRRIFHREVQQEEFQYPSNSCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTRIYTTKSINSLAYGLRYELLQRPILRMWNILNSTVEITTAQVKLSEYVIKRYSKPTTQAQQVELYEVMRDVTWALFASRKALNAITINYRNGFVQAFHRDHRSNNTFYIFSDLVNYSISGSYNSNTLSSHQGWNDQSIHSNISAIWYHVPLDPVSGERIGKPKAIPPDDQINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWDPSNQSIVAVVGVTTALYSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPKLMLAIDSEDRVIRLGAEWLQRTYGYKFPPSHVVHVENAKLGHEHYYIDSFFLNLKRLPMVGVIIIPRKYIMGKVEERALKTLIILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLISNSIKFTTSGHIILRGWCENSNAYGNSGKFPLNQKASRSALKAKFKQHRNHAKRACKKNNKMTLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNSPGTIMQLYLLLNTPIEGAGQHCQLEFGEHSLVVLLALSGSMGRLIMSQWLRKNGVFTWEASEWNELTQILGQLFRARSSVPNGGLVMQCLPSEPLKTEAPNIQDTRASVFVIIVDIGLLDWSTDIWREQLNFLDKYHGKARFAWILNHDTSNFIKMELRRKGHLLMVNKPLYKSKVVHILEAVIKGRDLEMQGRILNGLKSTRIEGNLHESLEIDSTHFEEVPSSDDSDRSEMGSHKSINAYHIAEKQKDRIRKPCPSQYQTANSCLVEFTQVYSTENNLRTEDPHQIRPNSHDAGNEGHKLMCNKSTSPLTEAECENCRGQEQHLISTCPKEHGNSYSGKTVNGQKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALKCMPGAEESRGKCLLQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRKSEEGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYRLMVSTILSLTKRMA* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1328 1235 FunFam Histidine kinase 1-like protein 469 548 - -
Vvi4g1328 1235 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 536 742 IPR036890 -
Vvi4g1328 1235 Gene3D - 549 746 IPR036890 -
Vvi4g1328 1235 PANTHER TWO-COMPONENT HISTIDINE KINASE 44 749 - -
Vvi4g1328 1235 SMART HisKA_10 481 547 IPR003661 GO:0000155|GO:0007165
Vvi4g1328 1235 SMART HKATPase_4 594 746 IPR003594 -
Vvi4g1328 1235 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 594 744 IPR003594 -
Vvi4g1328 1235 SMART REC_2 1085 1227 IPR001789 GO:0000160
Vvi4g1328 1235 Pfam Response regulator receiver domain 1087 1225 IPR001789 GO:0000160
Vvi4g1328 1235 CDD REC_hyHK_CKI1_RcsC-like 1087 1227 - -
Vvi4g1328 1235 SUPERFAMILY CheY-like 1083 1232 IPR011006 -
Vvi4g1328 1235 ProSiteProfiles Response regulatory domain profile. 1086 1231 IPR001789 GO:0000160
Vvi4g1328 1235 Pfam His Kinase A (phospho-acceptor) domain 482 547 IPR003661 GO:0000155|GO:0007165
Vvi4g1328 1235 ProSiteProfiles Histidine kinase domain profile. 488 746 IPR005467 -
Vvi4g1328 1235 Gene3D - 1065 1232 - -
Vvi4g1328 1235 CDD HisKA 482 543 IPR003661 GO:0000155|GO:0007165
Vvi4g1328 1235 Gene3D - 469 548 - -
Vvi4g1328 1235 PRINTS Bacterial sensor protein C-terminal signature 671 685 IPR004358 GO:0016310|GO:0016772
Vvi4g1328 1235 PRINTS Bacterial sensor protein C-terminal signature 689 699 IPR004358 GO:0016310|GO:0016772
Vvi4g1328 1235 PRINTS Bacterial sensor protein C-terminal signature 706 724 IPR004358 GO:0016310|GO:0016772
Vvi4g1328 1235 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 469 548 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1328 Vvi-Chr4 20226445 20235895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1328 4 1235 Histidine Kinase Gene Family AT2G17820 65.517 0.0 1610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi4g1328 HATPase_c 1.9e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1328 - - vri:117913039 2431.37