Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1320 ATGGACTCTCAGAGCTCAGCAACAGAGGTCGTCACCATTGATGTTCACGCAGCTAAGGATCTCATCAATTCAGGCTACCGTTATCTTGATGTCAGGACGGTTGAAGAGTTCAAGAAAGGCCATGCCGATGTGGAGAACATTCTGAACATCCCTTACCTCTTCACCACCCCTGAGGGAAGGGTGAAAAATCCTGAATTCTTGGAGCAGGTTCAGTTTGCTTGTAGCAAGGAAGACCATCTCATCGTGGGCTGTCAAAGTGGGGTGAGATCCCTTGCGGCCACCTCTGTTCTTGTCAGTGCTGAAACAAACATAGGCCAACTATGTCATTGGGTTTTAAGGGCTCAAAATTTCTCATTAATTTAA 363 0.4656 MDSQSSATEVVTIDVHAAKDLINSGYRYLDVRTVEEFKKGHADVENILNIPYLFTTPEGRVKNPEFLEQVQFACSKEDHLIVGCQSGVRSLAATSVLVSAETNIGQLCHWVLRAQNFSLI* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1320 120 CDD RHOD 17 100 - -
Vvi4g1320 120 PANTHER THIOSULFATE SULFURTRANSFERASE 18 3 103 IPR044684 GO:0003824
Vvi4g1320 120 ProSiteProfiles Rhodanese domain profile. 22 100 IPR001763 -
Vvi4g1320 120 Pfam Rhodanese-like domain 18 98 IPR001763 -
Vvi4g1320 120 Gene3D - 2 107 IPR036873 -
Vvi4g1320 120 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 9 101 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1320 Vvi-Chr4 20127079 20128458 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1320 1 100 Sulfurtransferasese or Rhodanese AT5G66170 55.000 1.56e-36 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1320 - K15692 vvi:100260808 199.519