Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1318 ATGTCGACCGCTGCAGCCAAAGCCCTTGCTGGAATTCTAGTGTTTGTTTCTTACTCTGTTCGCCTCACCTACGCTATTGTTCACCTCAAATCCTTGTCCGCTTCCTTCATTGACGCTCCCGCCAGATTTGCTGTTAGTGTTAACAGCACTGGAATATGCGGAGCTTTGCATTTGGCAGATCCTCTCGAGGCATGTTCTTCTCTGCTCAACAGGTTTCGATCCCAAGAAATTGATACAATAAAATTTGCTCTGATAATTAGGGGTAAATGTGCTTTTGAGGATAAAGTCCGAAATGCTCAAGATGCTGGCTTTCATGCTGTAATCGTGTATGATGATCGAGATAAGGGGAATTTGGTTTCCATGATAGGAAACTCCCAGGGCATATGGGTGCCTGCAGTTTTTGTTTCTAAGGCAGCTGGTGAAACCCTGAAGATATATGCTCAAGGACAAGAAGGGGAATGCTGCATTATAAACCCTTCATTCCCAGAATCTGCCTGGACTGTGATGGTAATATCTTTCATCTCACTTCTTGTCATAGCAACTGTCGTGTTAACGTTCTTCCTCACTCGCAACCGCCGGTTGAATCAACGAGGAACAAATCCCCACCGTCCTAGTGTGGATGCCAAGTTGGTGGAAGTTCTTCCCTGCTTTACATTCAGTCAAGCATGTGAGTGCCGCGTAGGAGATACATGTTCCATCTGTCTTGAGGACTACAAAGATGGTGAACGGCTCAGAGTTCTCCCCTGCCAACATGAATTTCACGCGAGCTGTGTGGACTCATGGCTTACAAAGTGGGGGACTTTCTGCCCGGTGACTTTCTTTTTACACCAGATAAATCTAACTGCTGAATTCTATACGGATGTTTTGATTTCTTCCTTCTTTTGTCTTCTGCTCTTTTGCAGCCCAGCAACAGAATTTATCAGCGCTGATGCTCATGAAGCTAAGGATCTTATTGCCTCCGGCTATAGATACCTAGATGTTAGGATGGTGGAAGATTTCAACAAAGGCCATGTGGATGTTGAGAGCGTCTTTAACATCGCTTACTTCATCATGACCCCAGAGGGTAGGGTGAAAAATCCTCAATTTTTGGAGCAGGTTTTGTCGGTTTGCAGCAAGGAAGATGGTCTCATTGTGGGCTGTGGAACCGGGGACAGGTCTCGTCTTGCAACGGTTGATCTTCTTAATGCTGATTTCAAACACGTAAGGAACATGGGAGGAGGATATCGATCCTGGCACGAGGCTGGATTGGGCGTGAAGAAAGAGGCTTGA 1269 0.4594 MSTAAAKALAGILVFVSYSVRLTYAIVHLKSLSASFIDAPARFAVSVNSTGICGALHLADPLEACSSLLNRFRSQEIDTIKFALIIRGKCAFEDKVRNAQDAGFHAVIVYDDRDKGNLVSMIGNSQGIWVPAVFVSKAAGETLKIYAQGQEGECCIINPSFPESAWTVMVISFISLLVIATVVLTFFLTRNRRLNQRGTNPHRPSVDAKLVEVLPCFTFSQACECRVGDTCSICLEDYKDGERLRVLPCQHEFHASCVDSWLTKWGTFCPVTFFLHQINLTAEFYTDVLISSFFCLLLFCSPATEFISADAHEAKDLIASGYRYLDVRMVEDFNKGHVDVESVFNIAYFIMTPEGRVKNPQFLEQVLSVCSKEDGLIVGCGTGDRSRLATVDLLNADFKHVRNMGGGYRSWHEAGLGVKKEA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1318 422 Pfam PA domain 81 143 IPR003137 -
Vvi4g1318 422 CDD RHOD 313 411 - -
Vvi4g1318 422 Pfam Ring finger domain 229 271 IPR001841 -
Vvi4g1318 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 274 IPR013083 -
Vvi4g1318 422 Gene3D - 18 156 - -
Vvi4g1318 422 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 306 418 IPR036873 -
Vvi4g1318 422 FunFam Putative RING zinc finger domain superfamily protein 201 273 - -
Vvi4g1318 422 CDD PA_C_RZF_like 31 165 IPR044744 -
Vvi4g1318 422 ProSiteProfiles Rhodanese domain profile. 318 420 IPR001763 -
Vvi4g1318 422 SUPERFAMILY RING/U-box 228 271 - -
Vvi4g1318 422 ProSiteProfiles Zinc finger RING-type profile. 231 271 IPR001841 -
Vvi4g1318 422 PANTHER THIOSULFATE SULFURTRANSFERASE 18 303 420 IPR044684 GO:0003824
Vvi4g1318 422 SMART ring_2 231 272 IPR001841 -
Vvi4g1318 422 SUPERFAMILY PA domain 81 147 IPR046450 -
Vvi4g1318 422 Pfam Rhodanese-like domain 311 413 IPR001763 -
Vvi4g1318 422 SMART rhod_4 309 417 IPR001763 -
Vvi4g1318 422 Gene3D - 302 419 IPR036873 -
Vvi4g1318 422 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 23 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1318 Vvi-Chr4 20118660 20122995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1318 17 271 C3H Transcription Factor Family AT1G22670 42.023 3.85e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1318 K15692 - vvi:100245428 549.666