Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1312 ATGGCGCAGGAGAGGTCAACCGGGGTGGTTAGGTGGTTTAGCGATCAGAAAGGGTTCGGCTTTATCACTCCCAACGAGGGCGGTGAAGATCTCTTTGTGCACCAATCGTCCATCAAGTCCGACGGTTTTCGCAGCCTCGGAGAAGGCGAGACCGTTGAGTTCCAGATCGTCCTCGGGGAAGATGGTAGGACCAAGGCCGTAGATGTCACCGGACCTGACGGATCTTCCGTTCAGGGAAGCAAGAGAGACAACTACGGGGGTGGTGGTGGCGGCGGTGGAAGGGGTGGCCGCTCTGGGGGCGGGTATGGAAGCGGATGGAGAACTGGTGATAGGGGCGGCAATGGTGGTGGCGGTGCCGCTTGTTATAATTGTGGCGGGACCGGGCATTTGGCTAGGGATTGCGTCCGAAGAAATAATGGCGGCGGCGGCGGCGGTAGTGGTGGAGGAGGCGGAGGCGGAGGTTGTTATACCTGTGGTCAGCCAGGACATTTGGCTAGGGACTGTTCCCGTCCAAGCGGCGGAGGCGGTGGCGGTGGCGGTTGTTATAACTGTGGTGATTATGGGCACCTGGCTAGGGATTGCACTCTGGAAAGCGGCAGCGCTGGTAGGTTCGGTGGTGGCGGAGGTGGAGGCGGTGGAAGGTTTGGTGGCGGTGGCGGTGGATGCTACAACTGTGGACAGGAAGGGCATTTTGCTAGAGAATGCCCTAACCCTAACCCATCGTGA 726 0.5964 MAQERSTGVVRWFSDQKGFGFITPNEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGEDGRTKAVDVTGPDGSSVQGSKRDNYGGGGGGGGRGGRSGGGYGSGWRTGDRGGNGGGGAACYNCGGTGHLARDCVRRNNGGGGGGSGGGGGGGGCYTCGQPGHLARDCSRPSGGGGGGGGCYNCGDYGHLARDCTLESGSAGRFGGGGGGGGGRFGGGGGGCYNCGQEGHFARECPNPNPS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1312 241 Gene3D - 94 147 - -
Vvi4g1312 241 Gene3D - 152 205 - -
Vvi4g1312 241 Pfam Zinc knuckle 221 237 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 Pfam Zinc knuckle 180 195 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 Pfam Zinc knuckle 120 134 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 Pfam Zinc knuckle 154 169 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Vvi4g1312 241 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Vvi4g1312 241 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Vvi4g1312 241 SMART csp_8 7 72 IPR011129 GO:0003676
Vvi4g1312 241 ProSiteProfiles Zinc finger CCHC-type profile. 155 168 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 Gene3D - 1 84 IPR012340 -
Vvi4g1312 241 Gene3D - 218 241 - -
Vvi4g1312 241 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Vvi4g1312 241 MobiDBLite consensus disorder prediction 65 106 - -
Vvi4g1312 241 SUPERFAMILY Retrovirus zinc finger-like domains 113 168 IPR036875 GO:0003676|GO:0008270
Vvi4g1312 241 ProSiteProfiles Zinc finger CCHC-type profile. 121 134 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 ProSiteProfiles Zinc finger CCHC-type profile. 181 194 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Vvi4g1312 241 SUPERFAMILY Retrovirus zinc finger-like domains 146 196 IPR036875 GO:0003676|GO:0008270
Vvi4g1312 241 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Vvi4g1312 241 ProSiteProfiles Zinc finger CCHC-type profile. 222 237 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Vvi4g1312 241 SUPERFAMILY Retrovirus zinc finger-like domains 205 239 IPR036875 GO:0003676|GO:0008270
Vvi4g1312 241 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Vvi4g1312 241 PANTHER COLD SHOCK DOMAIN PROTEIN 2 173 238 - -
Vvi4g1312 241 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 SMART c2hcfinal6 154 170 IPR001878 GO:0003676|GO:0008270
Vvi4g1312 241 SMART c2hcfinal6 221 237 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1312 Vvi-Chr4 20080786 20081511 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vvi4g1312 CSD 7.3e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1312 K09250 - vvi:100259081 342.043