Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1308 ATGGATAAGCAGTTTGCTGACTCAGCAGCACAGCAGCACCCGACAGTGCCACCGGATAAGCACTTTCAACCCACCTCCCCGCCGCTCTCCCATCATAACTTTTTAACACACTGTATAATGCTCTCTGCATCTTCTCCTTCATTTCTCCGGCCATCTCCTCGCTTCACCGGCAGAGCTTTTTCTCCGGCGCCGCCGCGTGTCAGCTACCGTCAGCCCTGTGTTTCCGCCGTTTACACCTCCACTGAAAGAGCGAGGCCCTCTTACCTGAGCCTCGCCGAAACGGCGTCGTGCGCCTCTCTTTATGAGATCCTTGGCATCCGTATGGGCGCCACCAGTCAAGAGATCAAGTCGGCGTACCGGAAATTGGCTAGAGTTTGTCATCCTGATGTTGCTGCGATCAGCCGGAAGGATTCGTCAGCCGATGAGTTCATGAGGATCCACGCAGCTTACTCGACTCTCTCTGATCCTGAGAAACGCGCCGATTATGACAGGTCGCTTTTTATGCGGCAACAGCCGATCGAATCTTACGCCGGCATTTCTTCTCCGACGATGTCCGGATTTTCCGGCTATACTCGCCGAAATTGGGAAACGGATCAGTGCTGGTAG 606 0.5446 MDKQFADSAAQQHPTVPPDKHFQPTSPPLSHHNFLTHCIMLSASSPSFLRPSPRFTGRAFSPAPPRVSYRQPCVSAVYTSTERARPSYLSLAETASCASLYEILGIRMGATSQEIKSAYRKLARVCHPDVAAISRKDSSADEFMRIHAAYSTLSDPEKRADYDRSLFMRQQPIESYAGISSPTMSGFSGYTRRNWETDQCW* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1308 201 ProSitePatterns Nt-dnaJ domain signature. 143 162 IPR018253 -
Vvi4g1308 201 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 54 201 - -
Vvi4g1308 201 Gene3D DnaJ domain 89 182 IPR036869 -
Vvi4g1308 201 PRINTS DnaJ domain signature 138 158 IPR001623 -
Vvi4g1308 201 PRINTS DnaJ domain signature 101 119 IPR001623 -
Vvi4g1308 201 PRINTS DnaJ domain signature 119 134 IPR001623 -
Vvi4g1308 201 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g1308 201 Pfam DnaJ domain 100 163 IPR001623 -
Vvi4g1308 201 SUPERFAMILY Chaperone J-domain 96 172 IPR036869 -
Vvi4g1308 201 ProSiteProfiles dnaJ domain profile. 99 166 IPR001623 -
Vvi4g1308 201 SMART dnaj_3 98 158 IPR001623 -
Vvi4g1308 201 CDD DnaJ 101 155 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1308 Vvi-Chr4 20028906 20029590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1308 101 163 C2H2 Transcription Factor Family AT1G74250 43.284 1.16e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1308 - - vvi:100247204 322.398