Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1307 ATGATTTCCGCGGTAGATGAAATTCGCAGGCTTCTCGAGTCATCATCGGAGGAGTCAATTTATAGAAGCCTGACCACAACCATATGCGCCTTCGTCGCAGGCTTCGGCATGGCATTTGTTTTCGGTGCCTTCATCGTCAGTTGCACAATCCGAAGGCTCCGAGGGTACGGTGACGAATCACAACATCATGGCTCAACCGCATCGGCCGCTTCTTCGTCGGGACAACGCCGCCGCGAGCATGTGGTTGCCATACCAGTGCACATATACGGCCCCGGACCGTCATCCTCGTGCGCTGCTACGACGTCGTATGAGTTACAGGCCTGCGCCATATGTTTGTGTGAGTACGAGAATGGGGAGCGCGTGAGTGTTCTGCCTCGATGTAAGCACATGTTCCACAAGGACTGCATCGAACAGTGGGTGCCCGTGAAGTCGGTGAATTGTCCCATTTGTAGGGCTCCGACGGTAGGCGGAGACGCATGTTCGGCGTGGATGAATTGCTGA 501 0.5509 MISAVDEIRRLLESSSEESIYRSLTTTICAFVAGFGMAFVFGAFIVSCTIRRLRGYGDESQHHGSTASAASSSGQRRREHVVAIPVHIYGPGPSSSCAATTSYELQACAICLCEYENGERVSVLPRCKHMFHKDCIEQWVPVKSVNCPICRAPTVGGDACSAWMNC* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1307 166 Pfam Ring finger domain 107 151 IPR001841 -
Vvi4g1307 166 SUPERFAMILY RING/U-box 107 154 - -
Vvi4g1307 166 SMART ring_2 108 150 IPR001841 -
Vvi4g1307 166 MobiDBLite consensus disorder prediction 61 75 - -
Vvi4g1307 166 MobiDBLite consensus disorder prediction 57 76 - -
Vvi4g1307 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 155 IPR013083 -
Vvi4g1307 166 ProSiteProfiles Zinc finger RING-type profile. 108 151 IPR001841 -
Vvi4g1307 166 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1307 Vvi-Chr4 20022053 20022553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1307 24 151 C3H Transcription Factor Family AT3G10910 30.597 4.23e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1307 - - vvi:104879151 312.383