Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1305 ATGATGGATCAGTGGAAAGCTGATGATTTCACGCAATCAGTTGCACCAGAGTTAGCCCCTTCCAATCCTCTTTCGTTGCCCTCCTCCAATAATCGCTTGCCGGAAGCCAGACAAAGAACTGAAGTGGAAGCAAAGGATTCAATTGCAGCAAGAAAAGTTCAGAAGGCAGACCGTGAAAAGTTAAGGAGGGACAGACTGAATGAGCATTTTCTTGAGTTGGGAAACACATTAGACCCAGATAGGCCCAAGAATGACAAGGCAACCATCCTTGCAGATACAATTCAAATGCTGAAGGATTTGACTGCTGAAGTCAACAGACTAAAAGTTGAGTGTGCTGCACTTTCTGAAGAATCTCGTGAGCTAGTGCAGGAGAAGAATGAACTAAGAGAAGAAAAGGTAGCTCTAAAGTCTGATATTGACAATCTTAATGTTCAATATCAGCAAAGGCTCAGGGTCATGTTTCCATGGGCTCCAATCGATCCTTCTGTTGTCATGGGTCCTTCACCCTATTCTTATCCAGTTCCTGTGCCTGTTCCTTCTGGTCCAATTCCCATGCATCCATCTCTACAGCCATTTCCTTTCTTTGGAAATCAGAATCCTAGTGGAATCCCCAATCCCTGTTCAACTTTTATTCCATATCAAACTCCTGCTAATCCTCCTACTGAAGTTCCATCTGCCCAATATGCATCTGCTTCTCATGTGTCAAGCAAACCAGATTCCAAAAGCAAGTCATCAGATCGTGAAAGGAGCAGCAACACTGAAAAATGCGATGAATCTAATGATGTGGCAACAGACCTTGAACTAAAGACACCTGGATCATCATCACAACAGGATTTGCTGACAGGGGAAAAGAAGGGCAAACAATCACAAAGGAAGGAAAGAAGTGCTACAGATGGAAGCTGTTCAAGCAAGTATTCTTCTTCTCAAGCTCTCCAGGACAGCTCCTCCAACAGTGTGGGTGACCTCCCAAAATCTGATAAGTAA 984 0.438 MMDQWKADDFTQSVAPELAPSNPLSLPSSNNRLPEARQRTEVEAKDSIAARKVQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILADTIQMLKDLTAEVNRLKVECAALSEESRELVQEKNELREEKVALKSDIDNLNVQYQQRLRVMFPWAPIDPSVVMGPSPYSYPVPVPVPSGPIPMHPSLQPFPFFGNQNPSGIPNPCSTFIPYQTPANPPTEVPSAQYASASHVSSKPDSKSKSSDRERSSNTEKCDESNDVATDLELKTPGSSSQQDLLTGEKKGKQSQRKERSATDGSCSSKYSSSQALQDSSSNSVGDLPKSDK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1305 327 Coils Coil 90 145 - -
Vvi4g1305 327 PANTHER TRANSCRIPTION FACTOR BHLH121 26 325 IPR044579 GO:0003700|GO:0006879
Vvi4g1305 327 MobiDBLite consensus disorder prediction 15 35 - -
Vvi4g1305 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983
Vvi4g1305 327 MobiDBLite consensus disorder prediction 205 238 - -
Vvi4g1305 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 119 IPR036638 GO:0046983
Vvi4g1305 327 SMART finulus 56 106 IPR011598 GO:0046983
Vvi4g1305 327 MobiDBLite consensus disorder prediction 205 327 - -
Vvi4g1305 327 MobiDBLite consensus disorder prediction 299 327 - -
Vvi4g1305 327 MobiDBLite consensus disorder prediction 266 283 - -
Vvi4g1305 327 MobiDBLite consensus disorder prediction 1 56 - -
Vvi4g1305 327 MobiDBLite consensus disorder prediction 239 264 - -
Vvi4g1305 327 MobiDBLite consensus disorder prediction 36 56 - -
Vvi4g1305 327 CDD bHLH_AtILR3_like 55 129 - -
Vvi4g1305 327 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Vvi4g1305 327 MobiDBLite consensus disorder prediction 284 298 - -
Vvi4g1305 327 Gene3D - 48 134 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1305 Vvi-Chr4 20012148 20015203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1305 48 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.855 5.04e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi4g1305 HLH 9.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1305 - - vvi:100259173 539.265