Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1304 ATGGGGGCGTGCCTCTCCGCCACCAAAGTCAGAAGCTCCAACAGCAACACCACCGCAAACGCCGCAGCCACCAAGAATACCCGCCCTAGAGGGAGCTCCAAGACTAGCAATAAGAATCAGCAGAAGAAGCCGCAGGAGGGAGACAGGAATCGGTCAAATCAACAACACAGGAATCCTCAGCCGCAGAAGGTCAAGGATAGGGCCAATGGGAGGAGGGGGACTGGGATTATCCCTTGTGGGAAGCGCACCGATTTTGGGTACGCGAAGGATTTTGATGCTCGCTACACCATCGGCAAGTTGTTGGGCCACGGCCAATTTGGGTATACGTATGTCGCCACCGATAAGGCTAATGGGGATCGAGTTGCGGTTAAGAGAATTGAGAAGAATAAGATGATTCTTCCTATTGCTGTTGAAGACGTTAAGCGAGAGGTCAAAATATTAGAAGCGCTTACCGGCCATGAGAATGTGGTTCAGTTCCATAATGCATTTGAGGATGATTCTTATGTCTATATAGTTATGGAGTTATGTGAGGGTGGTGAATTGTTGGATCGGATATTGGCCAAGAAGGATAGCCGTTATAGTGAGAAAGATGCAGCAAAAGTTGTAAGGCAGATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGTCTGGTACACCGTGACATGAAACCAGAGAATTTTCTTTTCAAGTCAACCAAAGAGGACTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTGGGAAGAAGTTTCAAGATATTGTTGGTAGTGCCTACTATGTTGCTCCTGAAGTATTGAGACGGAAATCGGGACCTGAATCAGATGTCTGGAGTATTGGTGTCATTACCTACATTTTGCTCTGTGGGAAGCGCCCCTTCTGGGATAAGACTGAGGATGGAATTTTCAAGGAGGTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGCAATGGTGCTAAAGATTTTGTAAAGAAGTTACTAGTGAAAGACCCTCGGGCAAGACTTACTGCTGCTCAGGCCCTATCACATCCATGGGTTAGAGAAGGAGGAGATGCCTCTGAGATTCCGATTGATATTTCTGTTCTGTCCAACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAATTTGATGCTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAATGAGACAGGCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAGATTCTTCAAGCAATTGACAGCAATACAGATGGGCTTGTGGATTTTACCGAGTTTGTTGCAGCCACTCTACACGTGCATCAATTGGAGGAACATGACTCTGATAAGTGGCGACAGCGGTCACAGGCTGCTTTTGACAAATTTGATGTGGATAGGGATGGGTTCATAACCCCAGAGGAACTTAAACTGCACACGGGCTTAAGAGGCTCAATTGACCCACTGCTAGAGGAAGCTGATATTGACAAAGATGGGAGGATAAGCTTGGCAGAATTCCGAAGGCTTCTAAGAACAGCAAGTATTAGTTCGCGACAAGTACCTAGCTCATCTGGTTTTCGGAATCCTCGGAAAATTTAG 1677 0.4609 MGACLSATKVRSSNSNTTANAAATKNTRPRGSSKTSNKNQQKKPQEGDRNRSNQQHRNPQPQKVKDRANGRRGTGIIPCGKRTDFGYAKDFDARYTIGKLLGHGQFGYTYVATDKANGDRVAVKRIEKNKMILPIAVEDVKREVKILEALTGHENVVQFHNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYSEKDAAKVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKKFQDIVGSAYYVAPEVLRRKSGPESDVWSIGVITYILLCGKRPFWDKTEDGIFKEVLKNKPDFRRKPWPTISNGAKDFVKKLLVKDPRARLTAAQALSHPWVREGGDASEIPIDISVLSNMREFVKYSHLKQFALRALASTLDDEELADLRDQFDAIDVDKNGSISLEEMRQALAKDLPWKMKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDKWRQRSQAAFDKFDVDRDGFITPEELKLHTGLRGSIDPLLEEADIDKDGRISLAEFRRLLRTASISSRQVPSSSGFRNPRKI* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1304 558 Gene3D - 396 465 - -
Vvi4g1304 558 Gene3D - 377 535 - -
Vvi4g1304 558 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Vvi4g1304 558 SMART serkin_6 95 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1304 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vvi4g1304 558 ProSiteProfiles EF-hand calcium-binding domain profile. 515 542 IPR002048 GO:0005509
Vvi4g1304 558 Pfam Protein kinase domain 95 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1304 558 FunFam Calcium-dependent protein kinase 28 396 465 - -
Vvi4g1304 558 SUPERFAMILY Protein kinase-like (PK-like) 94 370 IPR011009 -
Vvi4g1304 558 FunFam calcium-dependent protein kinase 28-like 181 374 - -
Vvi4g1304 558 CDD STKc_CAMK 94 354 - -
Vvi4g1304 558 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Vvi4g1304 558 SMART efh_1 439 467 IPR002048 GO:0005509
Vvi4g1304 558 SMART efh_1 402 430 IPR002048 GO:0005509
Vvi4g1304 558 SMART efh_1 481 509 IPR002048 GO:0005509
Vvi4g1304 558 SMART efh_1 511 539 IPR002048 GO:0005509
Vvi4g1304 558 Pfam EF-hand domain pair 483 536 IPR002048 GO:0005509
Vvi4g1304 558 Pfam EF-hand domain pair 402 464 IPR002048 GO:0005509
Vvi4g1304 558 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Vvi4g1304 558 PANTHER SERINE/THREONINE-PROTEIN KINASE 72 524 - -
Vvi4g1304 558 MobiDBLite consensus disorder prediction 7 40 - -
Vvi4g1304 558 ProSitePatterns EF-hand calcium-binding domain. 520 532 IPR018247 -
Vvi4g1304 558 FunFam CDPK-related kinase 1 88 180 - -
Vvi4g1304 558 MobiDBLite consensus disorder prediction 1 77 - -
Vvi4g1304 558 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Vvi4g1304 558 Gene3D Phosphorylase Kinase; domain 1 91 177 - -
Vvi4g1304 558 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Vvi4g1304 558 SUPERFAMILY EF-hand 384 538 IPR011992 -
Vvi4g1304 558 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Vvi4g1304 558 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Vvi4g1304 558 Gene3D Transferase(Phosphotransferase) domain 1 178 376 - -
Vvi4g1304 558 ProSiteProfiles Protein kinase domain profile. 95 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1304 Vvi-Chr4 20005379 20011020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1304 1 558 EF-hand Containing Proteins AT2G17890 76.007 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi4g1304 Pkinase 6.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1304 K13412 - vvi:100248850 1099.35