Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1296 ATGGAACCTCAACAACAGCTCCAGCAGCAGCAGCAACAAAACCAACAACAGCCAAACGAGGATAGCGGCAGCAGCAAAGGCAGTTTTCTGTGCAGGCAAAGCAGTACACGCTGGACTCCTACAACTGACCAGATAAGAATATTGAAGGACCTTTACTACAACAATGGAGTTAGGTCCCCAAGTGCTGAACAGATTCAGAGGATCTCAGCTAGGCTGAGGCAGTACGGCAAGATCGAAGGCAAGAACGTCTTTTATTGGTTTCAGAACCATAAAGCTCGTGAAAGGCAGAAGAAGCGATTCACTACTGATATGCCCATGCAAAGATCCCTTGGAAATGCCGGTTGGAGACCTGATGATCCCATTCACAACAAATTTCATACCATTCCCACTCCTGGGATATCTTCCCCATCTTCTTCTTCTTCACCCAGTGTGCTTGCTGTTGGGCAGATGGGAAGCTTTGGATATGGATCTGTGGAGAGGAGTTTTACAGACTGTTCAATATCAGCAGGTGGTGGTCGTGGTGGGGTTGGTGGATCTATAAACCAGAGCTTCGAATGGGTTGGCATGGACCCATATTCTTCATCTTATGCACTCTTTGACAAGAGAAAAACAATGGGTGAAAGCTTCGAAGAAGAGCAAGAAGAAGAAGCAACTCCGGAGATTGAAACGCTCCCACTCTTTCCCATGCACGCTGAGGATATCACTGGCTTTTGCAACATTAAGCCCGAATCCGACGCCTACTACTCCGGCTGGTACAGGCCCGCCGACGCCAAGACCAGTTCCCGCACTTCTCTTGAGCTTAGCCTCAACTCCTACGCCGGCAGGTCCCCGGATTCCCCCTGA 843 0.4935 MEPQQQLQQQQQQNQQQPNEDSGSSKGSFLCRQSSTRWTPTTDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTTDMPMQRSLGNAGWRPDDPIHNKFHTIPTPGISSPSSSSSPSVLAVGQMGSFGYGSVERSFTDCSISAGGGRGGVGGSINQSFEWVGMDPYSSSYALFDKRKTMGESFEEEQEEEATPEIETLPLFPMHAEDITGFCNIKPESDAYYSGWYRPADAKTSSRTSLELSLNSYAGRSPDSP* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1296 280 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 14 273 IPR044555 GO:0003700|GO:0099402
Vvi4g1296 280 MobiDBLite consensus disorder prediction 257 280 - -
Vvi4g1296 280 CDD homeodomain 36 98 IPR001356 GO:0003677
Vvi4g1296 280 Pfam Homeodomain 35 96 IPR001356 GO:0003677
Vvi4g1296 280 Gene3D - 31 96 - -
Vvi4g1296 280 ProSiteProfiles 'Homeobox' domain profile. 31 97 IPR001356 GO:0003677
Vvi4g1296 280 SUPERFAMILY Homeodomain-like 28 102 IPR009057 -
Vvi4g1296 280 MobiDBLite consensus disorder prediction 1 35 - -
Vvi4g1296 280 SMART HOX_1 33 101 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1296 Vvi-Chr4 19837737 19839174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1296 29 233 Wox Gene Family AT2G17950 43.548 1.85e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi4g1296 Homeodomain 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1296 - - vvi:100267850 502.671