Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1285 ATGGGGCGAGTGATACGAGCACAGAGGAAAGGTGCGGGATCGGTTTTCAAGTCCCATACCCACCACCGCAAAGGTCCAGCCCGTTTCCGAAGCCTAGACTTCGGGGAGAGAAATGGGTATCTAAAGGGCGTAGTCACCGAAATCATCCACGACCCGGGTCGAGGCGCCCCACTCGCCCGAGTCACCTTCCGCCACCCTTTCCGATACAAACACCAGAAGGAGCTGTTCGTGGCGGCTGAGGGCATGTACACGGGCCAGTTCGTTTACTGCGGCAAGAAAGCCACCCTCATTGTCGGTAACGTTCTGCCCCTGCGCTCTATTCCCGAAGGTGCCGTGGTCTGTAACGTTGAACATCACGTTGGTGATCGAGGTGTCTTCGCCAGGGCATCCGGCGATTATGCTATTGTTGTCAGCCACAACCCTGATAATGGCACCAGCAGGATCAAGCTCCCATCTGGGGCTAAGAAGATTGTTCCAAGTGGATGCAGAGCAATGATTGGGCAGGTTGCAGGTGGAGGGAGGACTGAGAAGCCCATGCTCAAGGCTGGTAATGCTTACCACAAATATAGAGTAAAGAGGAACTGCTGGCCAAAGGTACGTGGTGTGGCAATGAACCCAGTGGAGCATCCCCATGGAGGAGGAAACCACCAGCACATTGGGCATGCAAGTACAGTCAGGCGCGATGCCCCTCCTGGCCAAAAGGTGGGTCTTATTGCTGCGAGAAGAACTGGTCGTCTCCGAGGGCAAGCTGCTGCCACTGCTGCCAAAGCCGACAAGGCATAG 783 0.5594 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLIVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARASGDYAIVVSHNPDNGTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKA* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1285 260 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vvi4g1285 260 Hamap 50S ribosomal protein L2 [rplB]. 1 246 IPR023672 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Vvi4g1285 260 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi4g1285 260 FunFam 60S ribosomal protein L2 170 247 - -
Vvi4g1285 260 MobiDBLite consensus disorder prediction 1 24 - -
Vvi4g1285 260 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Vvi4g1285 260 Gene3D - 1 86 IPR012340 -
Vvi4g1285 260 PANTHER RIBOSOMAL PROTEIN L2 2 254 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi4g1285 260 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Vvi4g1285 260 FunFam 60S ribosomal protein L2 1 86 - -
Vvi4g1285 260 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vvi4g1285 260 FunFam 60S ribosomal protein L8 90 169 - -
Vvi4g1285 260 Gene3D - 90 169 IPR014722 -
Vvi4g1285 260 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vvi4g1285 260 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vvi4g1285 260 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Vvi4g1285 260 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1285 Vvi-Chr4 19762634 19764243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1285 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 94.574 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1285 K02938 - vvi:100247214 498.049