Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1279 ATGAGAACTAGAAATGCCGAAACCCCCAAACCGGCGTCCAAAAAGAAGACGCCGCAGGCTAAGAAATCTGCCGGCAAGGCTCCTCAGACCACGCCCGAAACGGGGGCAGGATCGGTGACGCCGAAATCAACCGAGACGAAGCGTGTCTCTGCAACCAAAGGGAAGCAGGTGAAGACCAACGAAACTACACCGACATCGACACAGAACGCGGCTGCTGAATTGAACACTGGAGCATCAGTTGAAGAGGTGAAAACTGCAGCTAATGTGTCTCTAATAACACCAGAGACGAAAGCAGCTTCAGGTGCCAAATCAGTGGTGAAGAAAACGCCGGGAAAAGCTAGAACTCCTCCTTCAGTAAAAGCTGTTTCTGCGAAGACACCTGCATTGGGGGAGTCTTTAAAACCAAAGGTCGAGGAGCCCGTGAAGAAGGAAGGGGTTGATGCTGCAAAGGAGGGGGAGTCTACAGAGAAGGAAGGGACTGAGTCTGCAAAGAAGGAAGGACCTGTTGTTAAAAACGTTGAAGATTCCAACAAGAAGGAAACAAGTTCTGGTCATCCAGAAGGCGTTCCTACCGAGAATCCTAGAGATACTTCGGAGCATGAAGAAATTGTTGCCTTGAATGTTGCAAAATCTCCAGATAATGGAGAAATCAGTATTGCCAAGGAAGTGCCGGATGTGAATGAAGAATTGGGAGAGGAGATAAAACATGTTGAGGATAAAGAAGAGACTAAGAATGAGCAAGTTAACATGGAAGCAGAAACAAATGAGGCTAGAGTTGGAGAAGATGCCCCAGTGAAGGAGGATAAGTACTATGGTGATGAGGTAATGGACTATGGAGATGAAGAGGGACTTGAAGAACCTGAGGAAGAACTTCCAGTAAGTGATGCAGTGGATCCTGGAGAAGAAACAGAGGCCTTGGAGGAAGAACACAGAGAACTGACTGCTATTGCAAAGGAGCGGAAGATATCAAAAGCACACGAGATATTTGTTGGTGGATTGGATAGGGATGCTGAGGAGGAGGATGTAAAAAAGGTCTTTGAGAGGATTGGAGAGGTAGTCGAAGTTCGATTGCACAAGAATTTGTCATCTAATAAAAATAAGGGTTATGCATTTGTAAAGTTTGCTAATAAGGAGCATGCAAGCCGGGCTTTGTCAGAAATGAAAAACCCCGTTATTTGTGGGAAGCGATGTGGAACTGCACCCAGTGAGGACAATAACACATTGTTCTTAGGCAATATTTGCAACACATGGACGAAGGAAGCAATCAAACAAAAATTGAAAGACTATGGCATTGAAGGTGTTGGGAACATCACTCTTGTCCCAAATCCTCAACATGAAGGATTGAGTCGTGGTTTTGCTTTCCTTGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAGAAACCAGATGTTATATTTGGCCATGCTGAGCGAACTGCAAAAGTAGCTTTTGCAGAACCTTTACGTGAGCCAGACCCGGAGATCATGGCACAGGTTAAGTCTGTATTTGTTGATGGCCTCCCTCCTCACTGGGATGAAGACCGTGTTAGAGAGCAATTTAAAGGCTATGGGGAGATTGAACGAATTGTGCTTGCACGTAATATGTCGACTGCCAAGAGGAAGGATTTTGGTTTTGTTGATTTCACTACTCATGAGGCTGCTCTTTCTTGCATTGATAGTGTAAACAACACAGAATTGTGTGATGGGAACTCAAAGGCTGTGAAGGGGGGATTGTGTGGTGGATTTCGGATTGGTCATGGTGGTGTTGGATCTTCCTCAAAGTTTGGAAGGGGGGGTTTTGGACGGGGAGGACATCACTTCAACCGAGCACAATTTCAACGTGACAGGGGTTTCTATCAACGTGAATATGGTCCAACTGGTAGATTGGGGTTCCCCAATGCACCTGATTTTGATGGTCCATACCCTGAGTTCCATGAGAGACACTTTTTTGGAAGAGGAGGACGAAGGGGTTCTTTGAGGGGTGCTTATCAGGGATCTGGGGGAGGCTATCCAGCTGCTGTCCCACCAAGACCAAATCTTGATAGGCCCAGGCATGGTGCAATTGATAGGGGTCATGGGAAGTACTTCCCATTTAGGCAACAACCATTTTTCCCTGAAGAAGACTTTGACAACTCTTTTTCTGGGAGGCATTTTGATGACCCTTATCTTTATGAGGACAATGCACGTGGGATAAAACGACCATTTATACCAGACTGGGACCCTGGTTACATGGAACCAAGCAGGTTTCGCCCTCGACTGGATTACTCTGACCCAGAGGTTGATTTTCATGGATCTCGTTATCGGGATAATTTTGAAGCTGGCAGTAGTCTCTACTCACAAGATTATTATGGTCCTGATTATGATAGAGGTGCATATCCTTCCTATTACAGAGATGATCGGTCATATCGAGGCGGTTATTATTATTAA 2439 0.4567 MRTRNAETPKPASKKKTPQAKKSAGKAPQTTPETGAGSVTPKSTETKRVSATKGKQVKTNETTPTSTQNAAAELNTGASVEEVKTAANVSLITPETKAASGAKSVVKKTPGKARTPPSVKAVSAKTPALGESLKPKVEEPVKKEGVDAAKEGESTEKEGTESAKKEGPVVKNVEDSNKKETSSGHPEGVPTENPRDTSEHEEIVALNVAKSPDNGEISIAKEVPDVNEELGEEIKHVEDKEETKNEQVNMEAETNEARVGEDAPVKEDKYYGDEVMDYGDEEGLEEPEEELPVSDAVDPGEETEALEEEHRELTAIAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDSVNNTELCDGNSKAVKGGLCGGFRIGHGGVGSSSKFGRGGFGRGGHHFNRAQFQRDRGFYQREYGPTGRLGFPNAPDFDGPYPEFHERHFFGRGGRRGSLRGAYQGSGGGYPAAVPPRPNLDRPRHGAIDRGHGKYFPFRQQPFFPEEDFDNSFSGRHFDDPYLYEDNARGIKRPFIPDWDPGYMEPSRFRPRLDYSDPEVDFHGSRYRDNFEAGSSLYSQDYYGPDYDRGAYPSYYRDDRSYRGGYYY* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1279 812 CDD RRM_SF 328 397 - -
Vvi4g1279 812 MobiDBLite consensus disorder prediction 55 75 - -
Vvi4g1279 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 504 579 IPR000504 GO:0003723
Vvi4g1279 812 SMART rrm1_1 407 484 IPR000504 GO:0003723
Vvi4g1279 812 SMART rrm1_1 327 400 IPR000504 GO:0003723
Vvi4g1279 812 SMART rrm1_1 505 578 IPR000504 GO:0003723
Vvi4g1279 812 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 60 812 - -
Vvi4g1279 812 FunFam Heterogeneous nuclear ribonucleoprotein Q 406 490 - -
Vvi4g1279 812 SUPERFAMILY RNA-binding domain, RBD 403 572 IPR035979 GO:0003676
Vvi4g1279 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 406 491 IPR000504 GO:0003723
Vvi4g1279 812 MobiDBLite consensus disorder prediction 23 47 - -
Vvi4g1279 812 MobiDBLite consensus disorder prediction 1 76 - -
Vvi4g1279 812 SUPERFAMILY RNA-binding domain, RBD 324 397 IPR035979 GO:0003676
Vvi4g1279 812 MobiDBLite consensus disorder prediction 135 182 - -
Vvi4g1279 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 571 IPR000504 GO:0003723
Vvi4g1279 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 408 476 IPR000504 GO:0003723
Vvi4g1279 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 396 IPR000504 GO:0003723
Vvi4g1279 812 Coils Coil 227 247 - -
Vvi4g1279 812 Gene3D - 405 490 IPR012677 -
Vvi4g1279 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 404 IPR000504 GO:0003723
Vvi4g1279 812 MobiDBLite consensus disorder prediction 94 272 - -
Vvi4g1279 812 Gene3D - 297 404 IPR012677 -
Vvi4g1279 812 Gene3D - 493 628 IPR012677 -
Vvi4g1279 812 CDD RRM_SF 506 572 - -
Vvi4g1279 812 MobiDBLite consensus disorder prediction 222 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1279 Vvi-Chr4 19715106 19719231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1279 328 570 Eukaryotic Initiation Factors Gene Family AT1G71770 24.609 3.12e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1279 - - vvi:100259067 1503.03