Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g1279 | ATGAGAACTAGAAATGCCGAAACCCCCAAACCGGCGTCCAAAAAGAAGACGCCGCAGGCTAAGAAATCTGCCGGCAAGGCTCCTCAGACCACGCCCGAAACGGGGGCAGGATCGGTGACGCCGAAATCAACCGAGACGAAGCGTGTCTCTGCAACCAAAGGGAAGCAGGTGAAGACCAACGAAACTACACCGACATCGACACAGAACGCGGCTGCTGAATTGAACACTGGAGCATCAGTTGAAGAGGTGAAAACTGCAGCTAATGTGTCTCTAATAACACCAGAGACGAAAGCAGCTTCAGGTGCCAAATCAGTGGTGAAGAAAACGCCGGGAAAAGCTAGAACTCCTCCTTCAGTAAAAGCTGTTTCTGCGAAGACACCTGCATTGGGGGAGTCTTTAAAACCAAAGGTCGAGGAGCCCGTGAAGAAGGAAGGGGTTGATGCTGCAAAGGAGGGGGAGTCTACAGAGAAGGAAGGGACTGAGTCTGCAAAGAAGGAAGGACCTGTTGTTAAAAACGTTGAAGATTCCAACAAGAAGGAAACAAGTTCTGGTCATCCAGAAGGCGTTCCTACCGAGAATCCTAGAGATACTTCGGAGCATGAAGAAATTGTTGCCTTGAATGTTGCAAAATCTCCAGATAATGGAGAAATCAGTATTGCCAAGGAAGTGCCGGATGTGAATGAAGAATTGGGAGAGGAGATAAAACATGTTGAGGATAAAGAAGAGACTAAGAATGAGCAAGTTAACATGGAAGCAGAAACAAATGAGGCTAGAGTTGGAGAAGATGCCCCAGTGAAGGAGGATAAGTACTATGGTGATGAGGTAATGGACTATGGAGATGAAGAGGGACTTGAAGAACCTGAGGAAGAACTTCCAGTAAGTGATGCAGTGGATCCTGGAGAAGAAACAGAGGCCTTGGAGGAAGAACACAGAGAACTGACTGCTATTGCAAAGGAGCGGAAGATATCAAAAGCACACGAGATATTTGTTGGTGGATTGGATAGGGATGCTGAGGAGGAGGATGTAAAAAAGGTCTTTGAGAGGATTGGAGAGGTAGTCGAAGTTCGATTGCACAAGAATTTGTCATCTAATAAAAATAAGGGTTATGCATTTGTAAAGTTTGCTAATAAGGAGCATGCAAGCCGGGCTTTGTCAGAAATGAAAAACCCCGTTATTTGTGGGAAGCGATGTGGAACTGCACCCAGTGAGGACAATAACACATTGTTCTTAGGCAATATTTGCAACACATGGACGAAGGAAGCAATCAAACAAAAATTGAAAGACTATGGCATTGAAGGTGTTGGGAACATCACTCTTGTCCCAAATCCTCAACATGAAGGATTGAGTCGTGGTTTTGCTTTCCTTGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAGAAACCAGATGTTATATTTGGCCATGCTGAGCGAACTGCAAAAGTAGCTTTTGCAGAACCTTTACGTGAGCCAGACCCGGAGATCATGGCACAGGTTAAGTCTGTATTTGTTGATGGCCTCCCTCCTCACTGGGATGAAGACCGTGTTAGAGAGCAATTTAAAGGCTATGGGGAGATTGAACGAATTGTGCTTGCACGTAATATGTCGACTGCCAAGAGGAAGGATTTTGGTTTTGTTGATTTCACTACTCATGAGGCTGCTCTTTCTTGCATTGATAGTGTAAACAACACAGAATTGTGTGATGGGAACTCAAAGGCTGTGAAGGGGGGATTGTGTGGTGGATTTCGGATTGGTCATGGTGGTGTTGGATCTTCCTCAAAGTTTGGAAGGGGGGGTTTTGGACGGGGAGGACATCACTTCAACCGAGCACAATTTCAACGTGACAGGGGTTTCTATCAACGTGAATATGGTCCAACTGGTAGATTGGGGTTCCCCAATGCACCTGATTTTGATGGTCCATACCCTGAGTTCCATGAGAGACACTTTTTTGGAAGAGGAGGACGAAGGGGTTCTTTGAGGGGTGCTTATCAGGGATCTGGGGGAGGCTATCCAGCTGCTGTCCCACCAAGACCAAATCTTGATAGGCCCAGGCATGGTGCAATTGATAGGGGTCATGGGAAGTACTTCCCATTTAGGCAACAACCATTTTTCCCTGAAGAAGACTTTGACAACTCTTTTTCTGGGAGGCATTTTGATGACCCTTATCTTTATGAGGACAATGCACGTGGGATAAAACGACCATTTATACCAGACTGGGACCCTGGTTACATGGAACCAAGCAGGTTTCGCCCTCGACTGGATTACTCTGACCCAGAGGTTGATTTTCATGGATCTCGTTATCGGGATAATTTTGAAGCTGGCAGTAGTCTCTACTCACAAGATTATTATGGTCCTGATTATGATAGAGGTGCATATCCTTCCTATTACAGAGATGATCGGTCATATCGAGGCGGTTATTATTATTAA | 2439 | 0.4567 | MRTRNAETPKPASKKKTPQAKKSAGKAPQTTPETGAGSVTPKSTETKRVSATKGKQVKTNETTPTSTQNAAAELNTGASVEEVKTAANVSLITPETKAASGAKSVVKKTPGKARTPPSVKAVSAKTPALGESLKPKVEEPVKKEGVDAAKEGESTEKEGTESAKKEGPVVKNVEDSNKKETSSGHPEGVPTENPRDTSEHEEIVALNVAKSPDNGEISIAKEVPDVNEELGEEIKHVEDKEETKNEQVNMEAETNEARVGEDAPVKEDKYYGDEVMDYGDEEGLEEPEEELPVSDAVDPGEETEALEEEHRELTAIAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDSVNNTELCDGNSKAVKGGLCGGFRIGHGGVGSSSKFGRGGFGRGGHHFNRAQFQRDRGFYQREYGPTGRLGFPNAPDFDGPYPEFHERHFFGRGGRRGSLRGAYQGSGGGYPAAVPPRPNLDRPRHGAIDRGHGKYFPFRQQPFFPEEDFDNSFSGRHFDDPYLYEDNARGIKRPFIPDWDPGYMEPSRFRPRLDYSDPEVDFHGSRYRDNFEAGSSLYSQDYYGPDYDRGAYPSYYRDDRSYRGGYYY* | 813 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g1279 | 812 | CDD | RRM_SF | 328 | 397 | - | - | |
Vvi4g1279 | 812 | MobiDBLite | consensus disorder prediction | 55 | 75 | - | - | |
Vvi4g1279 | 812 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 504 | 579 | IPR000504 | GO:0003723 | |
Vvi4g1279 | 812 | SMART | rrm1_1 | 407 | 484 | IPR000504 | GO:0003723 | |
Vvi4g1279 | 812 | SMART | rrm1_1 | 327 | 400 | IPR000504 | GO:0003723 | |
Vvi4g1279 | 812 | SMART | rrm1_1 | 505 | 578 | IPR000504 | GO:0003723 | |
Vvi4g1279 | 812 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 60 | 812 | - | - | |
Vvi4g1279 | 812 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 406 | 490 | - | - | |
Vvi4g1279 | 812 | SUPERFAMILY | RNA-binding domain, RBD | 403 | 572 | IPR035979 | GO:0003676 | |
Vvi4g1279 | 812 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 406 | 491 | IPR000504 | GO:0003723 | |
Vvi4g1279 | 812 | MobiDBLite | consensus disorder prediction | 23 | 47 | - | - | |
Vvi4g1279 | 812 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Vvi4g1279 | 812 | SUPERFAMILY | RNA-binding domain, RBD | 324 | 397 | IPR035979 | GO:0003676 | |
Vvi4g1279 | 812 | MobiDBLite | consensus disorder prediction | 135 | 182 | - | - | |
Vvi4g1279 | 812 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 506 | 571 | IPR000504 | GO:0003723 | |
Vvi4g1279 | 812 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 408 | 476 | IPR000504 | GO:0003723 | |
Vvi4g1279 | 812 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 328 | 396 | IPR000504 | GO:0003723 | |
Vvi4g1279 | 812 | Coils | Coil | 227 | 247 | - | - | |
Vvi4g1279 | 812 | Gene3D | - | 405 | 490 | IPR012677 | - | |
Vvi4g1279 | 812 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 326 | 404 | IPR000504 | GO:0003723 | |
Vvi4g1279 | 812 | MobiDBLite | consensus disorder prediction | 94 | 272 | - | - | |
Vvi4g1279 | 812 | Gene3D | - | 297 | 404 | IPR012677 | - | |
Vvi4g1279 | 812 | Gene3D | - | 493 | 628 | IPR012677 | - | |
Vvi4g1279 | 812 | CDD | RRM_SF | 506 | 572 | - | - | |
Vvi4g1279 | 812 | MobiDBLite | consensus disorder prediction | 222 | 272 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi4g1279 | Vvi-Chr4 | 19715106 | 19719231 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi4g1279 | 328 | 570 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 24.609 | 3.12e-16 | 81.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g1279 | - | - | vvi:100259067 | 1503.03 |