Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1278 ATGTCCACCGAAGGTGTCGCTGTCGAGCAACCGGAGCAGGAAGTGGTTGTGACGGAGCAGGCGGTAGCTCTGGAGATGCCAGCCCCGGAGAAGAAGCCAAAGGCTCGTAAGGAGAAGAAGCCCAAACAGGCCAGAGCTTCTTCTCATCCTCCTTACTTCCAGATGATCAAGGAGGCTCTTTTGGCTCTGGACGAGAAAAGTGGCTCCAGTCCGTACGCTATTGCCAAGCACATGGAAGAGAAGCACAAGGCAGTCCTCCCGGCGAATTTTAGGAAAATCCTGAGTCTTCAGTTGAAGAACTCCGTAGCGAAGGGAAATCTCATCAAGATCAAGGCTTCCTACAAGCTTTCCGGAGTAAGAAAAGGAACGGCAAAGTCCGATGGAGCGAAGAGAGCGAAGGCCACCTCTGATCCTAAGAAAAAGTCGGTGAAGAAATCAGAGACTCCAAAGAAAGTTGCGGCCAACAAGGCTAGGAAAACCGTGCCATCAAAGGTGAAGCAACCCAGGTCCATTAGATCTTCTGCTAAGAAGGCTAAGAAGGTCACAACCTGA 552 0.5109 MSTEGVAVEQPEQEVVVTEQAVALEMPAPEKKPKARKEKKPKQARASSHPPYFQMIKEALLALDEKSGSSPYAIAKHMEEKHKAVLPANFRKILSLQLKNSVAKGNLIKIKASYKLSGVRKGTAKSDGAKRAKATSDPKKKSVKKSETPKKVAANKARKTVPSKVKQPRSIRSSAKKAKKVTT* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1278 183 CDD H15 46 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi4g1278 183 MobiDBLite consensus disorder prediction 124 154 - -
Vvi4g1278 183 Pfam linker histone H1 and H5 family 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi4g1278 183 SUPERFAMILY "Winged helix" DNA-binding domain 46 121 IPR036390 -
Vvi4g1278 183 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi4g1278 183 MobiDBLite consensus disorder prediction 162 183 - -
Vvi4g1278 183 MobiDBLite consensus disorder prediction 21 51 - -
Vvi4g1278 183 PANTHER HISTONE H1 28 167 - -
Vvi4g1278 183 Gene3D - 43 135 IPR036388 -
Vvi4g1278 183 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi4g1278 183 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi4g1278 183 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi4g1278 183 PRINTS Histone H5 signature 170 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi4g1278 183 PRINTS Histone H5 signature 138 152 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi4g1278 183 MobiDBLite consensus disorder prediction 119 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1278 Vvi-Chr4 19696963 19697670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1278 50 125 Single Myb Histone (SMH) Gene Family AT1G72740 39.241 1.57e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1278 K11275 - vvi:100254064 280.411