Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1276 ATGATGGACTCTATGGAATCATGCGTCCCTCCAGGATTTCGATTCCACCCCACTGACGAGGAACTTGTTGGCTATTACCTCAAGAAGAAGGTCGCATCACAAAAGATTGATCTCGACGTTATCAGGGATATCGATCTGTATAGGATTGAACCTTGGGACCTCCAAGAGAGATGCCGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAGGATAAGAAATATCCAACGGGGACGAGGACCAATAGAGCGACCATGGCTGGGTTTTGGAAGGCGACGGGACGAGACAAAGCAGTGTATGATAAGACAAAACTCATCGGCATGAGGAAAACCCTCGTCTTTTACAAAGGGCGAGCGCCCAATGGGCAGAAAACTGACTGGATTATGCACGAGTACAGGCTCGAATCGGAAGAGAATGGACCTCCACAGGAAGAAGGATGGGTAGTCTGCCGAGCATTCAAAAAGAGAACCACCAGCCAAAGCAAGAGCATTGAAGGGTGGGACACAAGCTACTTCTACGATGAACCAAGTGGTGTGAGCACAGTCATGGATCCAATTGATTACATCTCAAGGCAGCCCCAGAACTATCTGGGGCAGAATTTCTTGTGTAAGCAAGAGATAGAGGCAGATAATTTGAATTTCATGCACGCTACCGAACACTTTGTGCAGCTTCCTCAGCTAGAAAGCCCATCTCTGCCATTAATGAAGAGGCCAAGTTCAGTTTCTTTAATATCAGAAAACAATGAGGAGGAAGATCAGACTAGAGGGTGCAACAACGCTGAGAAAGTCACAGATTGGAGGGCCCTCGACAAGTTTGTTGCTTCTCAGTTGAGTCAAGAAGACAGATATGAGGGTGATGGCGTTTCAAGCTTTGGAGCACATCATAATTCGGATATGGCGTTGCTGTTATTGCAGAGTAGTAGGGATGAAGCCAACAAGCTAAATGGGTTCTTGAATTCAAGCTCAGACTGCGACATCGGAATATGTGTATTTGAGAAATGA 1011 0.4639 MMDSMESCVPPGFRFHPTDEELVGYYLKKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESEENGPPQEEGWVVCRAFKKRTTSQSKSIEGWDTSYFYDEPSGVSTVMDPIDYISRQPQNYLGQNFLCKQEIEADNLNFMHATEHFVQLPQLESPSLPLMKRPSSVSLISENNEEEDQTRGCNNAEKVTDWRALDKFVASQLSQEDRYEGDGVSSFGAHHNSDMALLLLQSSRDEANKLNGFLNSSSDCDIGICVFEK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1276 336 FunFam NAC domain-containing protein 18 162 - -
Vvi4g1276 336 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Vvi4g1276 336 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Vvi4g1276 336 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Vvi4g1276 336 SUPERFAMILY NAC domain 6 158 IPR036093 GO:0003677|GO:0006355
Vvi4g1276 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1276 Vvi-Chr4 19681042 19683361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1276 2 335 NAC Transcription Factor Family AT2G18060 66.396 6.59e-171 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi4g1276 NAM 4.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1276 - - vvi:100243701 694.886