Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1271 ATGGCTGTGACACTAACTCCTCTTTTCTTCCTCATGCTTAGCTTCACCCCCTTCTTATCTTGCGCTCAACGGAGTGCTGAAACTCTGGCTGAGATTGAAGCGCTCACGGCTTTCAAACTCAATCTTCATGATCCGCTTGGAGTGTTGAACGGCTGGGATTCGTCAACGCCGTCTGCTCCATGCGACTGGCGTGGTGTGGGCTGCAGCAGTGGCCGAGTAAGCGACCTCCGCCTCCCTCGTCTACAACTAGGCGGTCGACTCACTGATCACCTTGGTGACCTGACCCAGCTGCGCAAGCTCAGTCTCCGTTCCAACGCCTTCAATGGTACAATCCCTTCTTCCCTCTCCAAATGCACTCTCCTTCGTGCCGTCTTCTTACAGTACAACTCATTCTCCGGCAATCTTCCGCCGGAGATCGGCAACCTCACCAATCTTCAAGTCTTCAATGTTGCCCAGAACCTTCTCTCCGGTGAAGTTCCTGGCGATCTTCCTCTGACTCTGCGATACCTGGATCTTTCATCCAACTTATTCTCTGGTCAAATTCCAGCGAGTTTTTCTGCCGCATCCGATCTTCAGCTCATCAACCTCTCGTACAACGACTTCTCCGGAGAGATTCCAGTGACCTTCGGCGCGCTTCAACAGCTTCAGTACCTCTGGCTTGATTACAATTTTTTGGACGGAACTCTACCTTCGGCGATCGCCAACTGCTCAGCCCTAATACATTTGAGTGTGGAGGGCAACGCGCTTCGGGGCGTAGTCCCGGTAGCGATTGCGTCTCTGCCGAAGCTTCAAGTGATTTCGCTTTCGCACAATAATCTCTCTGGTGCGGTCCCATCTTCTATGTTCTGCAACGTTTCTTCGCTTCGGATCGTTCAGCTAGGGTTTAATGCCTTCACGGACATTGTCGCGCCCGGGACAGCGACGTGTTCTAGTGTTCTGCAGGTTCTGGATGTTCAACAGAATCTGATGCACGGCGTGTTTCCTTTGTGGTTAACATTTGTCACTTCCTTAACAATGCTGGATGTTTCAGGTAACTCCTTCGCCGGCGCGCTTCCTGTTCAGATCGGAAACCTCTTGAGGTTGCAGGAACTAAAGATGGCTAATAATTCGTTAGACGGTGAGATTCCGGAGGAGTTGAGGAAGTGTAGTTATTTGCGTGTTCTTGATCTTGAAGGAAATCAATTTTCAGGGGCGGTTCCTGCGTTTTTGGGTGATCTGACAAGCTTGAAGACTTTGTCCCTTGGGGAGAATCTCTTCTCCGGTCTTATTCCACCGATTTTTGGTAAGCTCTCACAGCTAGAAACCTTGAACTTGAGGCACAACAATTTGTCCGGAACGATACCGGAGGAGCTATTGAGATTGAGTAACTTGACTACATTGGACCTAAGCTGGAACAAGCTTTCGGGTGAAATTCCAGCAAATATTGGGAATCTGAGTAAGCTACTTGTTCTGAATATTAGTGGTAACGCATATTCAGGGAAGATTCCTGCAACGGTGGGAAATTTATTCAAGCTAACGACCCTTGATTTGAGCAAGCAGAAACTTTCTGGTGAGGTGCCGGATGAGCTTTCAGGCTTGCCCAATTTGCAACTTATTGCTCTCCAGGAGAACATGTTATCTGGGGATGTTCCTGAAGGTTTCAGTAGCTTAGTGAGTCTGCGTTATTTGAACCTCAGTTCCAATTCCTTTTCCGGTCATATTCCAGCCACCTTTGGCTTTCTTCAGTCAGTGGTTGTTCTTTCATTGTCTGAAAATCTTATAGGTGGGTTGATTCCATCAGAGATAGGCAACTGCTCCGAGCTCAGAGTCCTTGAACTGGGATCAAATTCTTTGTCGGGTGACATTCCAGCTGATCTTTCTCGTCTCTCGCATCTGAATGAGCTTAATTTGGGTAGGAACAATTTAACAGGTGAAATCCCTGAAGAAATCTCAAAATGCTCGGCACTAACTTCTCTGTTGCTGGATACTAATCATCTTTCTGGTCACATTCCAAACTCATTGTCTAATTTGTCAAACCTAACAACACTGGATCTCTCTACAAACAACTTGACTGGGGAGATTCCGGCAAATCTTACACTGATCTCTGGCTTGGTAAACTTCAATGTCTCGCGAAATGATCTAGAAGGAGAGATTCCAGGACTACTGGGTTCTCGATTCAACAATCCATCTGTCTTTGCCATGAACGAAAACTTATGTGGGAAGCCCCTGGATAGGAAATGCAAAGAAATAAACACGGGTGGTAGGAGGAAGAGGCTGATTCTGTTATTTGCTGTGGCCGCAAGTGGAGCTTGCCTCATGGCATTATGCTGCTGCTTCTATATTTTCAGCCTCTTGAGGTGGCGCAAGAGGCTCAAAGAGGGGGCTGCGGGGGAGAAGAAAAGGAGCCCTGCGAGGGCAAGTTCAGGAGCCAGTGGGGGCCGTGGCAGTACTGATAATGGTGGACCAAAGCTTGTTATGTTCAATAACAACATCACACTTGCAGAAACAAGTGAAGCAACAAGGCAATTTGATGAGGAAAATGTGCTGAGCAGAACGCGATATGGTCTAGTTTTCAAGGCTTGCTACAATGATGGAATGGTTCTCTCAATTCGCCGACTCCCTGATGGACTGCTAGATGAAAACACATTCCGCAAAGAGGCTGAAGCACTAGGGAAAGTGAAACACCGTAACCTAACTGTCCTCCGCGGCTATTATGCTGGAGCATCTGATGTCAGACTCCTGGTTTACGATTACATGCCCAATGGAAACCTCGCAACCCTCCTACAAGAAGCATCCCACCAAGATGGTCATGTCCTCAATTGGCCAATGCGCCACCTTATTGCACTTGGAATCGCTCGGGGCTTAGCATTTTTACACACAGCTTCCATGGTTCATGGCGATGTCAAGCCACAAAACGTCCTATTTGACGCGGATTTTGAAGCCCATTTATCAGATTTCGGTCTCGACCGGCTGACAATTGCTGCCCCAGCGGAAGCTTCCACTTCCTCCACATCTGTTGGCACGCTAGGGTATGTCTCCCCGGAAGCAGTCCTAACAGGGGAAACCACAAAGGAATCAGATGTTTACAGCTTCGGCATTGTCTTGCTGGAACTTTTGACCGGAAAAAGACCTGTGATGTTTACACAAGACGAAGACATAGTGAAGTGGGTCAAGAGACAATTGCAAAGGGGTCAAGTCTCAGAACTGCTTGAGCCAGGACTCCTAGAACTCGATCCCGAATCATCAGAATGGGAAGAGTTCTTGCTGGGAGTGAAAGTGGGTTTGCTTTGCACCGCACCAGACCCTCTCGACCGACCCACCATGGCGGACACAGTGTTCATGCTAGAAGGTTGCCGTGTCGGACCCGATATTCCGTCGTCGGCCGATCCCACATCCCAACCCTCGCCGGCATGA 3393 0.4863 MAVTLTPLFFLMLSFTPFLSCAQRSAETLAEIEALTAFKLNLHDPLGVLNGWDSSTPSAPCDWRGVGCSSGRVSDLRLPRLQLGGRLTDHLGDLTQLRKLSLRSNAFNGTIPSSLSKCTLLRAVFLQYNSFSGNLPPEIGNLTNLQVFNVAQNLLSGEVPGDLPLTLRYLDLSSNLFSGQIPASFSAASDLQLINLSYNDFSGEIPVTFGALQQLQYLWLDYNFLDGTLPSAIANCSALIHLSVEGNALRGVVPVAIASLPKLQVISLSHNNLSGAVPSSMFCNVSSLRIVQLGFNAFTDIVAPGTATCSSVLQVLDVQQNLMHGVFPLWLTFVTSLTMLDVSGNSFAGALPVQIGNLLRLQELKMANNSLDGEIPEELRKCSYLRVLDLEGNQFSGAVPAFLGDLTSLKTLSLGENLFSGLIPPIFGKLSQLETLNLRHNNLSGTIPEELLRLSNLTTLDLSWNKLSGEIPANIGNLSKLLVLNISGNAYSGKIPATVGNLFKLTTLDLSKQKLSGEVPDELSGLPNLQLIALQENMLSGDVPEGFSSLVSLRYLNLSSNSFSGHIPATFGFLQSVVVLSLSENLIGGLIPSEIGNCSELRVLELGSNSLSGDIPADLSRLSHLNELNLGRNNLTGEIPEEISKCSALTSLLLDTNHLSGHIPNSLSNLSNLTTLDLSTNNLTGEIPANLTLISGLVNFNVSRNDLEGEIPGLLGSRFNNPSVFAMNENLCGKPLDRKCKEINTGGRRKRLILLFAVAASGACLMALCCCFYIFSLLRWRKRLKEGAAGEKKRSPARASSGASGGRGSTDNGGPKLVMFNNNITLAETSEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLPDGLLDENTFRKEAEALGKVKHRNLTVLRGYYAGASDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHTASMVHGDVKPQNVLFDADFEAHLSDFGLDRLTIAAPAEASTSSTSVGTLGYVSPEAVLTGETTKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKRQLQRGQVSELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMADTVFMLEGCRVGPDIPSSADPTSQPSPA* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1271 1130 Gene3D Transferase(Phosphotransferase) domain 1 912 1116 - -
Vvi4g1271 1130 Pfam Leucine rich repeat 600 659 IPR001611 GO:0005515
Vvi4g1271 1130 Pfam Leucine rich repeat 214 273 IPR001611 GO:0005515
Vvi4g1271 1130 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515
Vvi4g1271 1130 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Vvi4g1271 1130 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vvi4g1271 1130 SUPERFAMILY L domain-like 166 399 - -
Vvi4g1271 1130 SMART serkin_6 836 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1271 1130 ProSiteProfiles Leucine-rich repeat profile. 432 453 IPR001611 GO:0005515
Vvi4g1271 1130 SUPERFAMILY Protein kinase-like (PK-like) 817 1118 IPR011009 -
Vvi4g1271 1130 MobiDBLite consensus disorder prediction 789 816 - -
Vvi4g1271 1130 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 912 1116 - -
Vvi4g1271 1130 Pfam Protein kinase domain 846 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1271 1130 SUPERFAMILY L domain-like 29 163 - -
Vvi4g1271 1130 Gene3D Phosphorylase Kinase; domain 1 812 911 - -
Vvi4g1271 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Vvi4g1271 1130 FunFam Phytosulfokine receptor 1 167 469 - -
Vvi4g1271 1130 SUPERFAMILY L domain-like 380 612 - -
Vvi4g1271 1130 Gene3D Ribonuclease Inhibitor 29 163 IPR032675 -
Vvi4g1271 1130 Gene3D Ribonuclease Inhibitor 164 453 IPR032675 -
Vvi4g1271 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 799 911 - -
Vvi4g1271 1130 FunFam Nuclear pore complex protein NUP107 28 166 - -
Vvi4g1271 1130 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 474 744 - -
Vvi4g1271 1130 PRINTS Leucine-rich repeat signature 457 470 - -
Vvi4g1271 1130 PRINTS Leucine-rich repeat signature 670 683 - -
Vvi4g1271 1130 Pfam Leucine Rich Repeat 167 186 IPR001611 GO:0005515
Vvi4g1271 1130 Gene3D Ribonuclease Inhibitor 454 744 IPR032675 -
Vvi4g1271 1130 ProSiteProfiles Protein kinase domain profile. 836 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1271 1130 SUPERFAMILY Outer arm dynein light chain 1 552 733 - -
Vvi4g1271 1130 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 489 1108 - -
Vvi4g1271 1130 SMART LRR_sd22_2 94 117 - -
Vvi4g1271 1130 SMART LRR_sd22_2 260 287 - -
Vvi4g1271 1130 SMART LRR_sd22_2 212 238 - -
Vvi4g1271 1130 SMART LRR_sd22_2 670 699 - -
Vvi4g1271 1130 SMART LRR_sd22_2 454 480 - -
Vvi4g1271 1130 SMART LRR_typ_2 526 549 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 358 382 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 670 694 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 550 573 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 260 284 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 430 453 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 94 118 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 406 429 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 454 478 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 574 598 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 212 236 IPR003591 -
Vvi4g1271 1130 SMART LRR_typ_2 622 646 IPR003591 -
Vvi4g1271 1130 ProSiteProfiles Leucine-rich repeat profile. 672 694 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1271 Vvi-Chr4 19652846 19656238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1271 1 1130 Receptor kinase-like Gene Family AT4G36180 68.684 0.0 1499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vvi4g1271 Pkinase 7.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1271 - - vvi:100854147 2151.71