Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1263 ATGGCGATGATGATGCCGAAGCTGCTGTTGTTGATTTTTCTACTTGCAAGTGCAAGTTCAACGCTTAATGCAGATGGGTCTAATGAGTTGGTGATGACTGAAGAAGCCTACCGAAGTTGGGTAAAACGAGTGGGCTCTTTTAAGCACTCTGTCTTCCAGAAAGCAAAGAATAAGTTGAAGCCTTGCCTAACCATAAAAGTGGATAAAGACCAGAGCTTGGGTCATTTTGCCTCCGTGCAAAAGGCTGTTGATTCGCTTCCAGTCAACAATCCATGTCGGGTGGTTATCTCAATTGGTGCAGGGATTTACAGGGAGAAGGTGGTGATTCCTGCAATCAAGGCTTATGTCAGCCTGGAAGGTGCCGGTGCAGACAAGACCATTATTGAATGGAACGACACAGCAGACCTTGTAGGCCAGACTGGACGGCCGCTGGGCACCTTCGGTTCTGCAACATTTGCCGTTAATTCTCCTTACTTCATTGCAAAGAACATCACTTTCCAAAATAAAGCACCGCCACCACCATCAGGAGCTCTAGGAAAGCAAGCGGTGGCACTAAGAATCTCAGCAGATACAGCAGCCTTTATAGGCTGCAAGTTCATTGGAGCTCAAGATACACTATACGATCACATGGGCAGGCACTACTTCAGGGACTGCTACATCCAAGGCTCTGTGGATTTCATTTTCGGGAACGGCCTCTCCCTGTATGAGGGTTGCCATTTGCACGCTATCACCAACAGCGTGGGAGCCTTGACAGCTCAGAAGAGGGATGGCTTACTTGAGGAAACTGGCTTCTCCTTTGTTCATTGCAAAGTGACTGGTTCAGGTGCCCTATACTTGGGCAGGGCTTGGGGTACTTTCTCTAGGGTGGTTTTCGCTTTCACTTTTATGGACAAGATCATCAACCCTAGCGGATGGTATGCCTGGGGCAACAAAAGCAGGGAAATGACTGTATTTTACGGACAATACCAGTGTTCCGGGCCAGGGGCTGATTTTGGAAGAAGAGTTTCATGGTCAAGGGAGCTGACTCAACAGGAGGCCAAACCATTTATTTCAATTGGCTTTGTTGATGGCTATGAATGGCTTACAAACTTGTGA 1095 0.4767 MAMMMPKLLLLIFLLASASSTLNADGSNELVMTEEAYRSWVKRVGSFKHSVFQKAKNKLKPCLTIKVDKDQSLGHFASVQKAVDSLPVNNPCRVVISIGAGIYREKVVIPAIKAYVSLEGAGADKTIIEWNDTADLVGQTGRPLGTFGSATFAVNSPYFIAKNITFQNKAPPPPSGALGKQAVALRISADTAAFIGCKFIGAQDTLYDHMGRHYFRDCYIQGSVDFIFGNGLSLYEGCHLHAITNSVGALTAQKRDGLLEETGFSFVHCKVTGSGALYLGRAWGTFSRVVFAFTFMDKIINPSGWYAWGNKSREMTVFYGQYQCSGPGADFGRRVSWSRELTQQEAKPFISIGFVDGYEWLTNL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1263 364 ProSitePatterns Pectinesterase signature 2. 220 229 IPR033131 -
Vvi4g1263 364 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 53 362 - -
Vvi4g1263 364 Pfam Pectinesterase 67 357 IPR000070 GO:0030599|GO:0042545
Vvi4g1263 364 Gene3D - 62 364 IPR012334 -
Vvi4g1263 364 SUPERFAMILY Pectin lyase-like 63 362 IPR011050 -
Vvi4g1263 364 FunFam Pectinesterase 61 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1263 Vvi-Chr4 19585929 19587336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1263 9 361 Carbohydrate Esterase AT5G47500 45.787 2.71e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1263 K01051 - vvi:100854283 734.947