Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1256 ATGGATTCTATTATGGAAGGTTTGCAACCTTTGCAAATGACACTCTTATTCATTATTCCTTTAATCCTCTTGTTGGGTCTAGTTTCCCGGCTTCGCCGGAGGCGACCATACCCGCCTGGGCCCAAGGGTTTACCGTTGATCGGGAGTATGAATATGATGGACCAGTTAACTCACCGGGGACTGGCGAAAATCGCCAAGCAATATGGTGGTATTTTTCACCTTCGGATGGGTTATTTGCATATGGTGGGGGTTTCATCACCTGACATAGCTCGCCAGGTTCTGCAAGTTCAGGACAACATCTTCTCCAACCGTCCGGCCACCATAGCTATTAGCTACCTCACCTACGACAGAGCCGACATGGCCTTCGCTCACTACGGCCCATTCTGGCGTCAGATGAGGAAGCTTTGTGTTATGAAGCTCTTCAGCCGCAAACGGGCGGAGTCATGGGAGTCCGTACGAGAAGAGGTTGAGTCGACGGTCCGGACGGTGGCGAGCAGCATCGGGTCCCCTGTTAACATCGGAGAGTTGGTGTTCACACTCACTAAGAATATCATATACCGGGCTGCGTTCGGGACGAGCTCAAAGGAAGGCCAGGACGAGTTCATATCTATTTTACAGGAGTTCTCTAAACTGTTTGGTGCTTTCAATATCGCTGATTTCATCCCTTGGCTCAGCTGGGTCGATCCACAAGGACTCAACGCCAGACTCGCTAAGGCACGTAAATCGCTAGATGGTTTCATCGACGACATCATCGACGATCACATGCAAAAGAAGAAGTTGAATAACGACTCAGATGAAGTCGACACGGACATGGTGGATGACTTACTGGCTTTTTACAGTGAAGAGGCTAAAGTCAACGAGTCCGAAGATTTACAGAACGCCATCGAACTCACCAGAGATAACATTAAAGCTATCATCATGGACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCCATGGCAGAGATGATGAAAAGCCCAGAAGATCTCAAGAAAGTTCAACAGGAACTCGCCGACGTCGTGGGTCTGAACCGAAGAGTAGAAGAGAGCGACCTCGAGAAGCTGACATACCTCAAGTGTGTATTGAAGGAGACTCTCCGACTCCACCCACCTATTCCACTGCTCCTCCATGAGACCGCCGAGGACGCCGAAGTCGCCGGATACCACATTCCGGCGAGATCAAGGGTGATGATCAACGCCTGGGCTATAGGCAGAGACAAGAACTCGTGGGACGAACCAGAGACGTTCAAGCCTTCAAGGTTTCTCAAAGCGGGCGTACCCGATTTCAAAGGAAGCAATTTCGAGTTTATTCCATTTGGATCGGGTCGCCGTTCGTGCCCGGGAATGCAACTCGGACTCTACGCTCTTGAGTTGGCCGTGGTGCACCTTCTCCACTGCTTCACGTGGGAGTTGCCTGACGGCATGAAACCCAGTGAACTCGACATGGGCGACGTGTTCGGACTCACTGCGCCAAGAGCGACTCGACTCGTTGCGGTACCGAGTCCTCGCTTAGAGTGTCCTCTTTCTTGA 1545 0.5126 MDSIMEGLQPLQMTLLFIIPLILLLGLVSRLRRRRPYPPGPKGLPLIGSMNMMDQLTHRGLAKIAKQYGGIFHLRMGYLHMVGVSSPDIARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWESVREEVESTVRTVASSIGSPVNIGELVFTLTKNIIYRAAFGTSSKEGQDEFISILQEFSKLFGAFNIADFIPWLSWVDPQGLNARLAKARKSLDGFIDDIIDDHMQKKKLNNDSDEVDTDMVDDLLAFYSEEAKVNESEDLQNAIELTRDNIKAIIMDVMFGGTETVASAIEWAMAEMMKSPEDLKKVQQELADVVGLNRRVEESDLEKLTYLKCVLKETLRLHPPIPLLLHETAEDAEVAGYHIPARSRVMINAWAIGRDKNSWDEPETFKPSRFLKAGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVVHLLHCFTWELPDGMKPSELDMGDVFGLTAPRATRLVAVPSPRLECPLS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1256 514 CDD CYP71-like 67 501 - -
Vvi4g1256 514 PANTHER CYTOCHROME P450 84A1-RELATED 9 513 - -
Vvi4g1256 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506|GO:0016705
Vvi4g1256 514 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 Pfam Cytochrome P450 38 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 SUPERFAMILY Cytochrome P450 38 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 FunFam Cytochrome P450 84A1 30 507 - -
Vvi4g1256 514 Gene3D Cytochrome P450 30 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1256 514 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1256 Vvi-Chr4 19492725 19494435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1256 45 513 Monolignol Biosynthesis Gene Families AT4G36220 77.590 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1256 K09755 - vvi:100267863 949.118