Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1254 ATGGAATGCGTTGAGAAGGCCCTGAAGAGCAGTGTGGTTAGGCCGGAGTTGGCCTTTAAATTGACCCAACAACCGGCGTGTATGGATGATATGTGCATGGGAAATGGGCAAAGCGGTGTTTCTGGTGATGACTTCTCTATAGACGACCTTCTAGACTTCACAAATGGAGGTATTGGAGAAGGACTCTTCCAAGAAGAAGATGAAGAAGACGAGGACAAGGGCTGCGGCTCCCTTTCCCCTCGTGGGGAACTAACGGAGAACGATAACTCCAACCTTACTACTACAACTTTCTCCGTGAAAGACGAGTTCCCTTCCGTTCCCGCTACCGAACTCACAGTTCCGGCGGATGATTTGGCGGACCTTGAATGGTTGTCTCATTTTGTAGAGGATTCCTTCTCGGAATACTCCGCACCTTTCCCCCACGGAACCCTAACAGAGAAGGCCCAGAACCAAACGGAAAACCCCCCTGAACCGGAAACGCCGTTGCAGATAAAGTCGTGCCTGAAGACTCCATTTCCAGCCAAGGCTAGAAGCAAACGAGCGAGAACAGGCGGTCGGGTTTGGTCTATGGGTTCTCCGTCGCTTACGGAATCATCCTCCTCGTCTTCGTCTTCCTCTTCTTCGTCCCTTTCCTCGCCTTGGCTCATCTACCCCAACACGTGTCAGAACGTGGAATCGTTTCACTCGGCCGTAAAGCCGCCGGCGAAGAAGCACAAGAAAAGACTGGACCCGGAAGCCAGTGGCAGTGCGCAGCCGACCCCCCACCGGTGCAGCCATTGTGGGGTCCAGAAGACCCCACAGTGGAGAACCGGTCCGCTCGGTGCCAAAACCCTCTGCAACGCATGTGGGGTTCGCTACAAGTCCGGCCGACTCTTGCCTGAGTATAGACCAGCATGTAGCCCAACTTTTTCTAGCGAAATTCATTCAAATCACCACCGGAAAGTGTTGGAAATGCGGCGGAAGAAGGAGGTGACCCGGCCTGAATCCGGTTTAGCTCCGGCTGTTCCAAGTTTTTGA 1017 0.5349 MECVEKALKSSVVRPELAFKLTQQPACMDDMCMGNGQSGVSGDDFSIDDLLDFTNGGIGEGLFQEEDEEDEDKGCGSLSPRGELTENDNSNLTTTTFSVKDEFPSVPATELTVPADDLADLEWLSHFVEDSFSEYSAPFPHGTLTEKAQNQTENPPEPETPLQIKSCLKTPFPAKARSKRARTGGRVWSMGSPSLTESSSSSSSSSSSSLSSPWLIYPNTCQNVESFHSAVKPPAKKHKKRLDPEASGSAQPTPHRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSEIHSNHHRKVLEMRRKKEVTRPESGLAPAVPSF* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1254 338 Gene3D - 248 328 IPR013088 GO:0006355|GO:0008270
Vvi4g1254 338 MobiDBLite consensus disorder prediction 138 211 - -
Vvi4g1254 338 PANTHER GATA TRANSCRIPTION FACTOR 38 331 - -
Vvi4g1254 338 MobiDBLite consensus disorder prediction 231 258 - -
Vvi4g1254 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 313 - -
Vvi4g1254 338 PIRSF Txn_fac_GATA_plant 4 332 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi4g1254 338 MobiDBLite consensus disorder prediction 82 96 - -
Vvi4g1254 338 ProSiteProfiles GATA-type zinc finger domain profile. 251 287 IPR000679 GO:0006355|GO:0043565
Vvi4g1254 338 MobiDBLite consensus disorder prediction 189 211 - -
Vvi4g1254 338 Pfam GATA zinc finger 257 291 IPR000679 GO:0006355|GO:0043565
Vvi4g1254 338 ProSitePatterns GATA-type zinc finger domain. 257 282 IPR000679 GO:0006355|GO:0043565
Vvi4g1254 338 FunFam GATA transcription factor 247 331 - -
Vvi4g1254 338 SMART GATA_3 251 305 IPR000679 GO:0006355|GO:0043565
Vvi4g1254 338 MobiDBLite consensus disorder prediction 60 96 - -
Vvi4g1254 338 MobiDBLite consensus disorder prediction 143 159 - -
Vvi4g1254 338 CDD ZnF_GATA 256 304 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1254 Vvi-Chr4 19468180 19469278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1254 5 338 C2C2-Gata Transcription Factor Family AT5G66320 53.161 3.39e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi4g1254 GATA 4.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1254 - - vvi:100262474 657.521