Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1248 ATGTGCTGTCTGAAGTCAAAGGACCCGACACCACACGTTATCACACTAATACCTAAAGAGCCCTTTCACGGATTTGGAATACAACATTCCCAGCTACACTACAATCTCACTTTCCTCGCCACTTACCCGATACAGAAACTCATTTTTCTTTTTCCTTCTTCTTCTTCTTCTTCCTCCACTTATTGTGCCCTTGAACCACATTATTTGATTCTTGAGAAGAAGGAAGGAAGCAAAGCAAGAAAGATGGGTCGTGGGAAGATTGAGATCAAGAGGATAGAGAACCCCACCAACAGGCAGGTCACCTACTCCAAGCGACGAAATGGAATTTTCAAGAAAGCCCAGGAGCTCACCGTTCTTTGTGATGCTAAGGTTTCACTCATCATGTTCTCCAATACTGGAAAATTCCACGAATATACCAGTCCTACTATAACGACGAAAAAGGTCTACGATCAGTATCAGAAGACTTTAGGGATTGATCTTTGGAGCTCTCACTACGAGCGAATGCAAGAAAACTTGCGAAAACTGAAAGAGATCAACAACAAATTAAGGAGAGAGATCAGGCAAAGAATGGGTGAAGATTTGGGCGATCTGAGCATTGAGGACCTGCGCGGCCTTGAGCAGAAGATGGACGCTTCTTTAGGATTAGTACGCGAACGGAAGTACCACGTGATCAAAACTCAGACCGAGACCTACAGGAAAAAGGTCAGGAACTTGGAAGAACAACACGGAAATCTCCTTCTCAACTTTGAGGCAAAATGCGATGATCCACATTACGGATTAGTGGAAAATGATGGAGATTATGAATCAGCGGTGGCATTCGCAAACGGGGCTTCCAACCTCTATGCCTTTCGCCTGCATCAGGCCCACCCTAATCTTCACCATGATGGGGGATATGGATCACATGATCTGCGCCTTGCTTGA 921 0.4495 MCCLKSKDPTPHVITLIPKEPFHGFGIQHSQLHYNLTFLATYPIQKLIFLFPSSSSSSSTYCALEPHYLILEKKEGSKARKMGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYTSPTITTKKVYDQYQKTLGIDLWSSHYERMQENLRKLKEINNKLRREIRQRMGEDLGDLSIEDLRGLEQKMDASLGLVRERKYHVIKTQTETYRKKVRNLEEQHGNLLLNFEAKCDDPHYGLVENDGDYESAVAFANGASNLYAFRLHQAHPNLHHDGGYGSHDLRLA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1248 306 CDD MADS_MEF2_like 83 161 IPR033896 GO:0000977|GO:0045944
Vvi4g1248 306 Coils Coil 165 192 - -
Vvi4g1248 306 Gene3D - 94 162 IPR036879 GO:0003677|GO:0046983
Vvi4g1248 306 PRINTS MADS domain signature 84 104 IPR002100 GO:0003677|GO:0046983
Vvi4g1248 306 PRINTS MADS domain signature 119 140 IPR002100 GO:0003677|GO:0046983
Vvi4g1248 306 PRINTS MADS domain signature 104 119 IPR002100 GO:0003677|GO:0046983
Vvi4g1248 306 SUPERFAMILY SRF-like 83 176 IPR036879 GO:0003677|GO:0046983
Vvi4g1248 306 Pfam K-box region 162 247 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi4g1248 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 91 138 IPR002100 GO:0003677|GO:0046983
Vvi4g1248 306 ProSitePatterns MADS-box domain signature. 84 138 IPR002100 GO:0003677|GO:0046983
Vvi4g1248 306 ProSiteProfiles K-box domain profile. 165 255 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi4g1248 306 PANTHER SERUM RESPONSE FACTOR HOMOLOG 84 240 - -
Vvi4g1248 306 SMART madsneu2 82 141 IPR002100 GO:0003677|GO:0046983
Vvi4g1248 306 ProSiteProfiles MADS-box domain profile. 82 142 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1248 Vvi-Chr4 19395299 19397566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1248 82 289 MADS-box Gene Family AT3G54340 55.288 5.01e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi4g1248 K-box 6.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1248 K09264 - vvi:100233014 459.914