Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1244 ATGGCTGGGTTTTTCCCATTAGGTGGAGGGAGAGGAAGCAACCAAGACAGCAACCCACCAAACGAAATTCCTCCTGAAAGCTGTTTTTTTTACAGGAATGAAGACATCTCCTACAAGGGTTTCGAGCTATGGCAACATCAACCGCAAGAGCAACTCCATCAACGCCACCAACATCATCCACAAGACCTTTATTCATCTGGGCCTAGCTTAGGCGTGGGATCAAGTAGGAGCTCAATAAACTTGTCTGATGATTCTTCGAGATCGGCGTTTCTGATGATGAGACAAGCAGCTGGAGGAGGAGGAGCAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAATGAGTTGCCAAGATTGTGGAAACCAAGCGAAGAAGGATTGCATTCACATGCGGTGCAGGACATGTTGTAAGAGCCGAGGGTTTCAGTGCCCAACCCATATCAAGAGCACTTGGGTTCCTGCTGCTAAAAGGCGAGAGAGGCAACAACATCTCACTGTCATTCAACAACAACAGCAGCAACAGCAGCAGCAACAACACCAACAGCACCAACAACAACTGCAGCTCCGTGGAGAGAATCCCAAAAGGCAGAGAGAGAATCCAAGCTCTTCCGCTCTCGCCTGCACTCGTTTGCCCACCCACACGTCAGGGTTGGAAATAGCAAATTTTCCTTCAGAAGTGAACTCTCCCGCAGTGTTCCGCTGTGTTAGAGTTAGCTCCATTGACGAGACTGACGATCAGTACGCATACCAGACGGCTGTCAACATTGGAGGACATGTGTTCAAGGGAATTCTCTATGATCATGGTCCGGAAGGTCATTACGGTGGAGGCGAGAGTTCCTCCGCCGGTGGCGGAGGACTTCAGCAGCTTAATCTCATTACTGGTGCCGCAGCAGCCGCCAGTACCTCCACTGCCACAGCCGCCACCACTGGTAGTGGCAGTGCCGGTGCAGCCGCCGCATTTCTTGATCCTTCTTTATACCCAGCTCCCCTTAACACCTTCATGGCTGGTACGCAATTCTTCCCACACCCAAGACCTTGA 1035 0.5159 MAGFFPLGGGRGSNQDSNPPNEIPPESCFFYRNEDISYKGFELWQHQPQEQLHQRHQHHPQDLYSSGPSLGVGSSRSSINLSDDSSRSAFLMMRQAAGGGGAGAGGGGGGGGMSCQDCGNQAKKDCIHMRCRTCCKSRGFQCPTHIKSTWVPAAKRRERQQHLTVIQQQQQQQQQQQHQQHQQQLQLRGENPKRQRENPSSSALACTRLPTHTSGLEIANFPSEVNSPAVFRCVRVSSIDETDDQYAYQTAVNIGGHVFKGILYDHGPEGHYGGGESSSAGGGGLQQLNLITGAAAAASTSTATAATTGSGSAGAAAAFLDPSLYPAPLNTFMAGTQFFPHPRP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1244 344 NCBIfam LRP1 C-terminal domain 221 268 IPR006511 -
Vvi4g1244 344 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g1244 344 MobiDBLite consensus disorder prediction 49 83 - -
Vvi4g1244 344 NCBIfam putative zinc finger domain, LRP1 type 114 156 IPR006510 -
Vvi4g1244 344 MobiDBLite consensus disorder prediction 161 207 - -
Vvi4g1244 344 MobiDBLite consensus disorder prediction 61 83 - -
Vvi4g1244 344 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 330 IPR007818 GO:0003700|GO:0006355
Vvi4g1244 344 Pfam Domain of unknown function (DUF702) 112 269 - -
Vvi4g1244 344 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1244 Vvi-Chr4 19358408 19359850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1244 1 343 C2H2 Transcription Factor Family AT3G51060 50.000 2.57e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vvi4g1244 DUF702 3.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1244 - - vvi:100250664 560.836