Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1243 ATGGATCATGGCACGCTTGACAACCATCTGTTTCAAGTAAACCAGTTGGAATTCGGGAAGTTTCACGAGATTTCTGTTGGCACAACCAAAGCCATTGCGTATTTGCACAAAGAAATGCCAACAGAGAACCACTATGATATAAAGCCCGGAAACGTTCTCTTGGACTCCAACTTCACCCCTAAAGTAGCTGACTTGGGCTTGGCCAAGCTTTGCAACAGAGACATCACCCATATGACCTTGACAGGAGGAAGAGGAACACCTGGTGATGATATGGATGAACTTATGGTTGTCTGTGGTATTGAGGAGAACAGATCCAAGGTAGAGAACATGGCAAAGGTAGCTCTATGGTGTGTTCAGTACAAGCCAAAAGCAAGGCCTTCAGTGACCGTGGAGCTGAAAGGGTTGGAGGAAGCCATAAGTATTCCTACACCTTTATCACTACTTCATAGGGGGTTCCACTGCTGA 465 0.4602 MDHGTLDNHLFQVNQLEFGKFHEISVGTTKAIAYLHKEMPTENHYDIKPGNVLLDSNFTPKVADLGLAKLCNRDITHMTLTGGRGTPGDDMDELMVVCGIEENRSKVENMAKVALWCVQYKPKARPSVTVELKGLEEAISIPTPLSLLHRGFHC* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1243 154 Gene3D Transferase(Phosphotransferase) domain 1 1 88 - -
Vvi4g1243 154 Pfam Protein kinase domain 1 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1243 154 SUPERFAMILY Protein kinase-like (PK-like) 1 130 IPR011009 -
Vvi4g1243 154 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 94 IPR045874 GO:0004672
Vvi4g1243 154 ProSiteProfiles Protein kinase domain profile. 1 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1243 Vvi-Chr4 19351522 19352094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1243 1 88 Receptor kinase-like Gene Family AT1G66910 40.659 4.47e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vvi4g1243 Pkinase 8.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1243 - - vri:117913304 146.362