Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1242 ATGTTGGAATCCGATAGGCTTCACGAGATTGCTGTTGGGACAGCCAAAGCAATAGCAAATTTGCATGAAGAATGCCAACAGAGAATAATCCACTATGACATAAAGCCAGGAAACATCCTCTTGGACTCCAAATTCACCCCTAAAGTAGCTGACTTTGGCTTGGCCAAGCTTTGCAACTGGGACAACACCCATATAACCTTGACAGGAGGGAGGGGAACTCCAGGTTATTCTGCACCCGAACTTTGGATGCCCCTCCCTATCACCCATAAATGTGATGTTTACAGCTATGCGATGCTTTTGTTTGAAATCGTGGGTAGGAGAAGAAACCTTAATGTGAATGCTAAAGAGGGCCACGAATGGTTCCCAAAATGGGTTTGGGATAAAGTAGAGAATGGAGGGATGGGAGATCTAATGGCTGTATATGGGATTGAGGAGAAGAACAGATCCAAGGTAGATAAGATGGTAAAGGTAGCTCTATGGTGTATTCAGCATAGCCCAGAAGCAAGGCCTTTGATGAGCATGATGGTGAAAATGTTGGAAGGAGCTGTAGATATTCCCACACCTTTAAACCCATTTCAGTACTTCACAGGGGTTTCTTGTTCCGGGCTCCCTCGCGTGTAG 621 0.4541 MLESDRLHEIAVGTAKAIANLHEECQQRIIHYDIKPGNILLDSKFTPKVADFGLAKLCNWDNTHITLTGGRGTPGYSAPELWMPLPITHKCDVYSYAMLLFEIVGRRRNLNVNAKEGHEWFPKWVWDKVENGGMGDLMAVYGIEEKNRSKVDKMVKVALWCIQHSPEARPLMSMMVKMLEGAVDIPTPLNPFQYFTGVSCSGLPRV* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1242 206 SMART serkin_6 4 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1242 206 Gene3D Transferase(Phosphotransferase) domain 1 1 186 - -
Vvi4g1242 206 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 188 IPR045874 GO:0004672
Vvi4g1242 206 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1242 206 Pfam Protein kinase domain 3 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1242 206 FunFam Putative receptor-like protein kinase 1 187 - -
Vvi4g1242 206 SUPERFAMILY Protein kinase-like (PK-like) 5 180 IPR011009 -
Vvi4g1242 206 ProSitePatterns Serine/Threonine protein kinases active-site signature. 29 41 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1242 Vvi-Chr4 19345474 19346094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1242 2 185 Receptor kinase-like Gene Family AT5G38260 41.969 3.19e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vvi4g1242 Pkinase 2.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1242 - - vri:117913304 407.142