Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1241 ATGGACAGATTCCTTAGTGATATTGAGAAGGAGAAGCCCACCAGATTTTCCTTTCAGCAGCTTAAACAAGCAACCAATAACTTCAGCAACTTGCTGGGATCGGGTGGTTTTGGGGCAGTTTACAAAGGGCTATTTGCTGATGGGACTGCAGTGGCAGTCAAGGTTCTAAGTGGGAGCTCTGACAGGAGAATTGAGGAACAGTTCATGGCGGAAGTGAGTACCATTGGTAGGGTTCATCATTTCAATCTGGTTCAGCTCTATGGGTTCTGCTTTGAGAGAGACTAG 285 0.4632 MDRFLSDIEKEKPTRFSFQQLKQATNNFSNLLGSGGFGAVYKGLFADGTAVAVKVLSGSSDRRIEEQFMAEVSTIGRVHHFNLVQLYGFCFERD* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1241 94 PANTHER OS07G0415500 PROTEIN 5 93 - -
Vvi4g1241 94 SUPERFAMILY Protein kinase-like (PK-like) 10 94 IPR011009 -
Vvi4g1241 94 ProSiteProfiles Protein kinase domain profile. 26 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1241 94 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Vvi4g1241 94 FunFam serine/threonine-protein kinase PBS1-like 2 94 - -
Vvi4g1241 94 Gene3D Phosphorylase Kinase; domain 1 3 94 - -
Vvi4g1241 94 Pfam Protein tyrosine and serine/threonine kinase 28 92 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1241 Vvi-Chr4 19345123 19345407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1241 13 94 Receptor kinase-like Gene Family AT1G15530 47.619 2.34e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vvi4g1241 PK_Tyr_Ser-Thr 2.3e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1241 - - vri:117913304 189.119