Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1238 ATGGCTGAAACTGGTCCAGCACTGGCCAGGAGAATGCGTTGGGTGCCTGATCGTGCCAACCTGCACATAGCCATGAACGTTTTTCAGTTTGTTTATGCTGGGAATCATGTCATTTTGAGGACTGCCCTTAACATGGGTATAAGCAAGCTTGTTTTCCCTGCTTACAGGAACATCATCGCGCTGGCTATGATTGCTCCCTTCGCTTATTTCCTAGAGAAGAAGGACAGGCCGGCACTGACTGCTTCTTTTCTTGTGCAATTCTTCCTTCTCGCATTTGTTGGAATAACAGCAAATCAAGGATTTTACTTGTTGGGGTTAGACAACACATCACCCACCTTGGCTTCTGCTACAGAGAATGCTGTCCCGGCTGTGACCTTTCTGATGGCTGCTATCCTGCGAATTGAGGAAGTTCACTTGAACAGGAGAGATGGCAAAGCTAAAGTGCTTGGAACAATCTGTAGTGTTGCCGGAGCTTCAATTATAACCATTTACAAAGGGCCAATCATATTTAGGCCAAGCCATCCTTTGAACCAATCTCTTCCATCCATTTCACTTGGAGATGCTGAGGGGAAAAATTGGACCTTGGGTTGTGTCTGTCTCATCGGTCACTGCATATGTTGGTCCGGCTGGATCGTGCTACAAGCACCAATCTTGAAGAAATACCCAGCTCAGCTCTCAGTCTCCTCTTTCACTTGCTTCTTTGCAATCCTACAGTTTCTGGCGGTTGCGGGTTTAATTGAAAGAAACTCCCAAGCCTGGCTGTTTCATTCCCGAACCGAACTCTTCTGTGTTCTCTACTCGGGAGCTGTAGTTTCAGGAATTGGCTTTTCAATACAGCTATGGGCTGTTGGCAAGGCAGGCCCTGTGTTTGTTTCGGCATATCTACCTCTACAGACCCTCCTTGTTGCTGTCATGGCATCACTTGCTTTAGGCGAAAGATTCTATTTGGGAGGGGTCCTTGGAGCAGTGTTGATCTTAGTTGGACTATACCTTGTTGTCTGGGGAAAAAGTGAAGAGGGCAAGTTTGCTAGCAGAAAGGCTGTGATTCCTTCAGTGGCAGAGAGCAGTCCATCCACAAACAACAGAAAATCCTCAGTTTTCCAGCCACTGCTCCCTACCTCTTCCAAGTGA 1131 0.4713 MAETGPALARRMRWVPDRANLHIAMNVFQFVYAGNHVILRTALNMGISKLVFPAYRNIIALAMIAPFAYFLEKKDRPALTASFLVQFFLLAFVGITANQGFYLLGLDNTSPTLASATENAVPAVTFLMAAILRIEEVHLNRRDGKAKVLGTICSVAGASIITIYKGPIIFRPSHPLNQSLPSISLGDAEGKNWTLGCVCLIGHCICWSGWIVLQAPILKKYPAQLSVSSFTCFFAILQFLAVAGLIERNSQAWLFHSRTELFCVLYSGAVVSGIGFSIQLWAVGKAGPVFVSAYLPLQTLLVAVMASLALGERFYLGGVLGAVLILVGLYLVVWGKSEEGKFASRKAVIPSVAESSPSTNNRKSSVFQPLLPTSSK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1238 376 MobiDBLite consensus disorder prediction 351 376 - -
Vvi4g1238 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 337 - -
Vvi4g1238 376 Pfam EamA-like transporter family 195 333 IPR000620 GO:0016020
Vvi4g1238 376 Pfam EamA-like transporter family 32 162 IPR000620 GO:0016020
Vvi4g1238 376 PANTHER WAT1-RELATED PROTEIN 23 340 IPR030184 GO:0016020|GO:0022857
Vvi4g1238 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1238 Vvi-Chr4 19266368 19268623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1238 10 376 Nodulin-like Gene Family AT1G75500 62.105 7.88e-171 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1238 - - vvi:100257561 723.391