Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1230 ATGGAGGTGATTCATTGGTGTTGGGTTGTGGTGGGTGTTGTGATGGGGTGGTGTTGGTATAAGAGCATCAAGAACAAGGCGAAGGAGGAGGGAAGTGGGGTTCCCAGAGGAAACCCTGGTTGGCCAGTAATAGGAGAGACTCTTGACTTCATTGCTTCTGGTTGGAGCTCTCGACCAGTCAGCTTCATGGAGAAGCGCAAGTCTCGATATGGGAAGGTGTTCAAGACAAACATATTGGGAAAGCCGGTGATAGTGTCGACGGATCCGGAGGTGAACAAGGTGGTTCTGCAGAACATTGGGAATGTATTTATCCCTGCCTATCCCCAAACCATCACGGAGATACTTGGAGAATCATCTATACTCCAGATGAACGGCAGTCTGCAGAAGAGAGTGCATGCACTGCTTGGTGGCTTCTTGAGATCACCACAACTCAAAGCTCGAATCACCCGTGACATTGAACGCTATGTCAAACTCACCCTTGATTCTTGGAAAGACCAGCACATTGTTTACGTCCAAGATGAAGTCAGAAAGATCACGTTTGACGTTCTGGTTAGAGTTCTGGTGAGCATTACTCCAGGTGAAGATTTGAACTTTATGAAGAGAGAATTCGCAGAAGTCATCAAAGGCTTGATTTGTCTCCCAATTAAACTTCCCGGAACTAGACTATATAAATCTCTCAAGGCTAAGGAGAGGCTGTTGAAGCTGGTGAGAAGGATCGTGGAGGAGAGGAAGGCAGCCATGGATAGAGGTGATCATGAGACCCTCAAGGGTCCACCCAACGATGCCGTGGACGTGCTGCTCCGTGACACAGGGGATTCATCTGAGACGTCGCGTCTGTCGTTGGATTTCATCAGTTCGAATATGATCGAGATGATGATCCCCGGGGAGGAGACTCTGCCGACCGCCATGACCCTGGCCGTCAAATTTCTAAGTGACTGCCCCGTCGCTCTGAACCAGCTGATGGAGGAGAACATGGAGTTAAAGAAGGGAAAGGCTCTTTCCGGGGAGGATTATGCCTGGACTGACTACATGTGCTTGCCATTTACTCAAAATGTGATCAATGAAACTCTGAGAATGGCAAATATCATAAATGCGGTTTGGAGAAAAGCTGTTAAAGATGTCAAAATCAAAGATTACCTGATACCAGAGGGATGGGGTGTCATGGCATCTTTCACTTCCATTCACATGGATGAAGAGAATTATGAAAACCCTTATCAGTTCAATCCATGGAGATGGGAGAAGGCAGCTAGTGTCAACAACAACAATAGCTATACACCCTTCGGAGGTGGACAGAGGCTGTGCCCTGGTTTAGAATTATCGAAACTCGAAATCTCAATTTTTCTTCATCATCTCGTCACCACCTACCGGTGGGTGGCTAAGAAGGACGACGTAGTTTACTTTCCAACAGTGAAGATGAGGAAGAAGTTACCCATCACCGTCACACCCTTACCACCCCTTTGA 1461 0.4743 MEVIHWCWVVVGVVMGWCWYKSIKNKAKEEGSGVPRGNPGWPVIGETLDFIASGWSSRPVSFMEKRKSRYGKVFKTNILGKPVIVSTDPEVNKVVLQNIGNVFIPAYPQTITEILGESSILQMNGSLQKRVHALLGGFLRSPQLKARITRDIERYVKLTLDSWKDQHIVYVQDEVRKITFDVLVRVLVSITPGEDLNFMKREFAEVIKGLICLPIKLPGTRLYKSLKAKERLLKLVRRIVEERKAAMDRGDHETLKGPPNDAVDVLLRDTGDSSETSRLSLDFISSNMIEMMIPGEETLPTAMTLAVKFLSDCPVALNQLMEENMELKKGKALSGEDYAWTDYMCLPFTQNVINETLRMANIINAVWRKAVKDVKIKDYLIPEGWGVMASFTSIHMDEENYENPYQFNPWRWEKAASVNNNNSYTPFGGGQRLCPGLELSKLEISIFLHHLVTTYRWVAKKDDVVYFPTVKMRKKLPITVTPLPPL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1230 486 Pfam Cytochrome P450 35 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
Vvi4g1230 486 SUPERFAMILY Cytochrome P450 34 482 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 PANTHER CYTOCHROME P450 26 34 465 - -
Vvi4g1230 486 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 PRINTS P450 superfamily signature 140 153 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 CDD CYP90-like 66 482 - -
Vvi4g1230 486 FunFam 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 24 483 - -
Vvi4g1230 486 Gene3D Cytochrome P450 23 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 PRINTS E-class P450 group IV signature 434 452 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 PRINTS E-class P450 group IV signature 395 413 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 PRINTS E-class P450 group IV signature 61 84 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 PRINTS E-class P450 group IV signature 346 362 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1230 486 PRINTS E-class P450 group IV signature 418 434 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1230 Vvi-Chr4 19189535 19193911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1230 34 377 Cytochrome P450 AT4G36380 68.895 3.35e-171 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1230 K12637 - vvi:100259060 974.541