Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1222 ATGGCTCGGTTCATGAGCTTTCTCCTCGCTCTTTCTCTTCTTGCCTTTGTTCCCCTTTGCTTGTCTCACAAGACCAATGGTGGTTACCTCTATCCACAATTCTACGACCACTCATGCCCCAAAGCTCAACAAATTGTGAAGTCGGTGATGGCCAAGGCTGTTGCAAGAGAAGTTCGCATGGCTGCTTCAATCATGAGGCTTCACTTTCATGACTGTTTTGTAAAGGGCTGCGATGCATCAATCCTGCTAGACAGCAGTGGTGGCATAATCTCTGAGAAGAATTCCGTCCCTAACCGTAATTCTGCTCGAGGGTTTGAAGTTATTGACGATATCAAGTCTGCAGTAGAGAAGGAATGCCCCCATACTGTATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTGCCAGCTTGAGTGGTTCCAACAACAACATTCCTGCTCCAAACAACACCTTCCAGACCATTCTCACCAAGTTCAAGCTACACGGGCTTAACATCGTGGATCTTGTTGCTCTATCTGGGAGCCACACAATTGGGAATTCCCGGTGCACAAGCTTCAGACAGAGGCTCTACAACCAATCTGGCAATGGCCGGCCGGACTATTCGCTGGACCAGTCATATGCTGCTCAATTGCGCACCCGCTGCCCAAGATCAGGTGGTGACCAGAACCTGTTTTTCTTGGACTTTGTCAGCCCTACAAAGTTTGATAACAGCTACTTCAAGAACATATTAGCATCAAAAGGCCTGTTGAGTTCTGATCAACTTCTCTTCACAAAGAACCAAGCCTCCATGGATTTAGTAAAGCAATATGCAGCGAACAACAAGATTTTCTTTGAGCAATTTGCTCAATCCATGATTAAGATGGCAAATATATCTCCATTGACAGGTTCCAGGGGAGAGATCAGGAAAAACTGCAGGAGAGTCAATGGTCATTAG 999 0.4735 MARFMSFLLALSLLAFVPLCLSHKTNGGYLYPQFYDHSCPKAQQIVKSVMAKAVAREVRMAASIMRLHFHDCFVKGCDASILLDSSGGIISEKNSVPNRNSARGFEVIDDIKSAVEKECPHTVSCSDILAIAARDSSVLTGGPSWEVPLGRRDSRGASLSGSNNNIPAPNNTFQTILTKFKLHGLNIVDLVALSGSHTIGNSRCTSFRQRLYNQSGNGRPDYSLDQSYAAQLRTRCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLSSDQLLFTKNQASMDLVKQYAANNKIFFEQFAQSMIKMANISPLTGSRGEIRKNCRRVNGH* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1222 332 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Vvi4g1222 332 Gene3D - 34 330 - -
Vvi4g1222 332 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 FunFam Peroxidase 33 175 - -
Vvi4g1222 332 FunFam Peroxidase 167 309 - -
Vvi4g1222 332 PANTHER PEROXIDASE 72-RELATED 29 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 Gene3D Peroxidase, domain 2 167 310 - -
Vvi4g1222 332 ProSiteProfiles Plant heme peroxidase family profile. 29 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 CDD secretory_peroxidase 30 329 IPR033905 GO:0004601|GO:0042744
Vvi4g1222 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Vvi4g1222 332 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 Pfam Peroxidase 46 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1222 332 SUPERFAMILY Heme-dependent peroxidases 30 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1222 Vvi-Chr4 19132125 19133465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1222 1 330 Peroxidase AT5G66390 73.874 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1222 K00430 - vvi:100245432 653.284