Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1208 ATGGGTTCTTCTAGTGGAGCTTCTTCAGAGTCCAGCCAACTTCAACACTCAGGTTCCGAAGAGGATCTCCGGCAAATTATGGATCAAAGGAAGCGGAAAAGAATGCTTTCGAATCGCGAATCAGCGAGGCGATCGCGGATGCGTAAACAAAAGCATCTGGATGACATGATGGCCCAAATGGTTCATCTCAGGAAGGAGAACAACCGCATCCTCACAACCATGAACGTCACCACACAGTTCCATATGAACGTTGAGGCTGAGAATGCTATTCTGAGAGCTCAGATGGCTGAGCTTACCCTCCGATTACAGACTCTCAATGAAATCATGGACTACCTCAACTCAAGCAACGTCCCCTTTGGAACTGAATATCAGGGTACCCAGATAGCTGATGAATGCTTTATGAATATTCCATGGGTTCCCCCCTTCATCAATCAACCCATCATGGCTTCTGCAGACGGCATGTTCATGTACTGA 474 0.4726 MGSSSGASSESSQLQHSGSEEDLRQIMDQRKRKRMLSNRESARRSRMRKQKHLDDMMAQMVHLRKENNRILTTMNVTTQFHMNVEAENAILRAQMAELTLRLQTLNEIMDYLNSSNVPFGTEYQGTQIADECFMNIPWVPPFINQPIMASADGMFMY* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1208 157 SUPERFAMILY Leucine zipper domain 30 81 IPR046347 GO:0003700|GO:0006355
Vvi4g1208 157 Pfam bZIP transcription factor 30 71 IPR004827 GO:0003700|GO:0006355
Vvi4g1208 157 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g1208 157 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Vvi4g1208 157 MobiDBLite consensus disorder prediction 1 53 - -
Vvi4g1208 157 CDD bZIP_plant_GBF1 31 79 IPR045314 GO:0003700|GO:0006355
Vvi4g1208 157 MobiDBLite consensus disorder prediction 21 53 - -
Vvi4g1208 157 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Vvi4g1208 157 Gene3D - 28 83 - -
Vvi4g1208 157 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 70 IPR004827 GO:0003700|GO:0006355
Vvi4g1208 157 FunFam BZIP transcription factor 28 79 - -
Vvi4g1208 157 Coils Coil 81 108 - -
Vvi4g1208 157 PANTHER BZIP TRANSCRIPTION FACTOR 44 4 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1208 Vvi-Chr4 18984081 18984554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1208 26 157 bZIP Transcription Factor Family AT4G34590 50.694 2.97e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi4g1208 bZIP_1 3.2e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1208 K25786 - vvi:100247207 298.901