Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1206 ATGGAGTCTGTAGATGTCCATCGCCAGCATCAGCTCCAAGAACAGTTTATTATTAATGGATGTTCTTCTCTGGACACCCATGCTGGTTATGGAGTTCCAACCATCCATGGCCGGAGCCCAAGCATCACCATGAATGGTAGCAACCATACGTATGGGAACGAAATATTCCTCCCAAACTCAAGGGAGGTATGGCTAAAGAATGCCATTATGGATCCTCCTGTTAAAGCTTCCATGATTCAGGACTTGGGTTTTCATACTCATCAGTCACCCACTGAGGTACTGAACTTTACCAAAATCAAAGAGGAGTTGCCCAATTCTTTTCCCAAGTTTGGTGAAATGGTTGACAATCATTCCAATGTAGAAGAATTACATTTAGTACCTTCCATAGGCAGCTACATGAAACATGGCCAACAGCCCTTTCGAGATCTAAGTGAGAATCTCTGTTGGCTAAGCAGCAACTCATCTGAGGGACTTCAACTTTTGGCCGGAGATTCTTACTCAAATGCTCGAGAATCTGAAGGTTATGGAAGTGCATACGCATCTAGCAGATTCAACTTCAGCCATGGGTTTCCAAGTGCAAATCTTCCCAACCTGGATTTCTCGTCTTCATTAGTTTCCAATTCCTTGGGGTTGAATTTACAAACTTTGGATCTCTTAGCTTCTGCAAATTATGGTGGTGGGTCTAGCAAATCTTCACATAATGATCTTGATCCTTTTAAAGAAAGTATGCCTTTAGATCATGATCATATGCAAGAATCAAGTCACAATCCATCAAACAGCTCTAAAATGACATCAGCCTTCATGAATGGAGTTTCAAGAACAAAGGTAACCCGCAGTAGAACTGCACCGAAGGCTTTGCATGCAGCAACTAAGATGTCTGGGTTCGGACCACGATCCTCGTATCCACCCCTGAAGGTTAGAAAGGAGAAACTAGGAGACAGGATTGCAGCTCTTCAGAGGCTGGTGGCACCCTTTGGAAAGACAGATACTGCCTCCGTATTGACAGAGGCTATTGGGTACATTCAATTCCTTCATGACCAGATCCAGACATTGAGCGTGCCTTACATGAAGTCATCCCAGAGCAAGTCTCTTGTTCCAATGCAAATGGTAAGGTCCAAAATACTCTCTCTCCTCTCTCTCCTATGTTAG 1149 0.4369 MESVDVHRQHQLQEQFIINGCSSLDTHAGYGVPTIHGRSPSITMNGSNHTYGNEIFLPNSREVWLKNAIMDPPVKASMIQDLGFHTHQSPTEVLNFTKIKEELPNSFPKFGEMVDNHSNVEELHLVPSIGSYMKHGQQPFRDLSENLCWLSSNSSEGLQLLAGDSYSNARESEGYGSAYASSRFNFSHGFPSANLPNLDFSSSLVSNSLGLNLQTLDLLASANYGGGSSKSSHNDLDPFKESMPLDHDHMQESSHNPSNSSKMTSAFMNGVSRTKVTRSRTAPKALHAATKMSGFGPRSSYPPLKVRKEKLGDRIAALQRLVAPFGKTDTASVLTEAIGYIQFLHDQIQTLSVPYMKSSQSKSLVPMQMVRSKILSLLSLLC* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1206 382 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 158 378 - -
Vvi4g1206 382 CDD bHLH_AtbHLH_like 305 352 IPR045239 -
Vvi4g1206 382 Gene3D - 305 365 IPR036638 GO:0046983
Vvi4g1206 382 MobiDBLite consensus disorder prediction 234 253 - -
Vvi4g1206 382 MobiDBLite consensus disorder prediction 227 262 - -
Vvi4g1206 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 358 IPR036638 GO:0046983
Vvi4g1206 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Vvi4g1206 382 FunFam Transcription factor bHLH123 family 305 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1206 Vvi-Chr4 18963085 18965679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1206 30 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 33.088 4.42e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1206 - - vvi:104879136 739.954