Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1202 ATGACGCCCAACGAAATCTACGATGCTACCCAGGCCTATCTCGACACCAAGATCCCACCTTTCATTGAACGCCTTAAAGTTGGGAAAACCCCAAGGGACAACAATCTCAACGTTACAATCGCAGAGGGCCAAGTGGTTCCCGATTCCTTCGAAAACATCAAGCTCAAGTGGGTGCTCGGTACAAAGCGTGACGACGATGGATTCGACAGCACATTCGAGCTTAGCTTCGACAAGAAATACAAAGAAATTGTGCTCCAGTCTTACTTGCCTCACATAATGGCCAGGGCCAATGACCTTAAAGTAACAGACAAGGTACTCAAACTTTATAGCCGTAGCCATACACAACGTGGTGGAGACGATTCCTACGACTACACTGGAGACTGGGGATTCATCACTCTGAAGCATCCGGCCACGTTTGACACTATGGCGATGGATCCGGAACTAAAGAAGGCGATAATTGATGATTTGAATAGGTTTGTTGCGAGGAAGGAGTATTATAAGAGGGTTGGAAAGCCTTGGAAGCGTGGATACTTATTGTACGGTCCTCCAGGCACGGGGAAATCAAGCTTGATTGCAGCCATGGCCAATTATCTCAAGTTTGACATCTACCATGTGGAGCTCAATAGCATTCGCTCCGATAACGAACTCAAGCAGATATTGGTGTCAACTACTAGTAAATCCATGATAGTGATCGAGGATATTGATTGTAATGCGGAGACTCGAGATCGTGGAGACTTTTTGGACCTATATGAGCCCACCATAGCTAAGCTGACACTATCGGGCATACTAAATTTCACTGATGGGTTATGGTCAAGTTGCGGAGAGCAGCGAATCATTGTGTTTACCACAAACCACAAGGATCGACTTGCTCCTGCTCTGCTGCGTCCTGGTCGCATGGATATGCATATCTACATGTCTTATTGTACTTACGATGGTTTTAAGACCTTAGCTTCCAATTACCTTGGTGTTACTGACCATCCACTCTTTGGGGAGATCGAAACCCTCCTTAAAAATACGGAGGTTAGTCCGGCAGAAATTGGGGAGGAGTTAATGAGGAGCGATGATGCTGATGTTGCGCTTGGAGGACTTGTTGAATTCATCAACCGGAAAAAGATCGAAGGCAATAGAATGGAGGGAAGAGAAAACGATGATGAACATGAAGTCAGCGGTGAAGGGAGCGGTGAAGAATAA 1191 0.4601 MTPNEIYDATQAYLDTKIPPFIERLKVGKTPRDNNLNVTIAEGQVVPDSFENIKLKWVLGTKRDDDGFDSTFELSFDKKYKEIVLQSYLPHIMARANDLKVTDKVLKLYSRSHTQRGGDDSYDYTGDWGFITLKHPATFDTMAMDPELKKAIIDDLNRFVARKEYYKRVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYHVELNSIRSDNELKQILVSTTSKSMIVIEDIDCNAETRDRGDFLDLYEPTIAKLTLSGILNFTDGLWSSCGEQRIIVFTTNHKDRLAPALLRPGRMDMHIYMSYCTYDGFKTLASNYLGVTDHPLFGEIETLLKNTEVSPAEIGEELMRSDDADVALGGLVEFINRKKIEGNRMEGRENDDEHEVSGEGSGEE* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1202 396 MobiDBLite consensus disorder prediction 374 396 - -
Vvi4g1202 396 PANTHER BCS1 AAA-TYPE ATPASE 7 372 - -
Vvi4g1202 396 SMART AAA_5 173 309 IPR003593 GO:0016887
Vvi4g1202 396 Pfam Domain associated at C-terminal with AAA 2 59 IPR025753 -
Vvi4g1202 396 Gene3D - 304 376 - -
Vvi4g1202 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 355 IPR027417 -
Vvi4g1202 396 CDD RecA-like_BCS1 152 305 - -
Vvi4g1202 396 Pfam ATPase family associated with various cellular activities (AAA) 178 306 IPR003959 GO:0005524|GO:0016887
Vvi4g1202 396 Gene3D - 129 303 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1202 Vvi-Chr4 18932987 18934303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1202 147 305 Calmodulin-binding Proteins AT3G56690 26.786 6.36e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1202 - - vvi:100262690 790.03