Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1196 ATGGATGAGGGTCTCTACCATATTCATTGTGGCATCCAGATATATAGTGTCACCCCGGCAACCCTCTCCATCTTCGTCACCGTCACCCACTTCCGCTCGCCTGACTATGCTCTTCCCGGCGACAATGGCGGCTGGTGCAACTCTTTCCTTGTCCCCACTTCAACCTTGTCGCGCCCGTGTTTCTTAAGACCGCCGGGTACCAGACCGGAATTGCCTCCGTTGCCTTCCGTCGGGTACCCTGCTAAAGGAGTGGCTGCTTGTAGAGTGGGTTCAACTATCCCGTTGTCCACTGATCACGAACCTGACAGATCTGATGAACGTCAAAGGATTGAAGACGCTGGAGGTTTCGTTATTTGGGCAGGAATCTGGCGGGTTGGTGGTGTTCTTTCTGTTTCTTGTGCATTTGGGGATGAACTTCTTAAGGCATCATGTTGTTGCTGA 441 0.5238 MDEGLYHIHCGIQIYSVTPATLSIFVTVTHFRSPDYALPGDNGGWCNSFLVPTSTLSRPCFLRPPGTRPELPPLPSVGYPAKGVAACRVGSTIPLSTDHEPDRSDERQRIEDAGGFVIWAGIWRVGGVLSVSCAFGDELLKASCCC* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1196 146 Gene3D - 81 144 IPR036457 -
Vvi4g1196 146 PANTHER PROTEIN PHOSPHATASE 87 141 IPR015655 GO:0004722|GO:0006470
Vvi4g1196 146 Pfam Protein phosphatase 2C 87 141 IPR001932 -
Vvi4g1196 146 SUPERFAMILY PP2C-like 86 141 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1196 Vvi-Chr4 18868963 18869621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1196 84 141 PP2C-type Phosphatase Gene Family AT1G43900 75.862 5.59e-26 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1196 K17506 - vvi:104879041 132.88