Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1160 ATGGAGAATTCCACCAGATACGGCAGAACCTCTCTGCCTCATTTCCCACCTTCCAAGTCAAGGCGGAGCGGTTACGAACCTTCTGATACGGAGACTGACTGGCAGGATAGTCCGTGGCGTGACCGCAATGAAACTAACGGACCTTTGCGCAGTGAACTGCCCAGAACTCCTTTCGACCCGTTGCCAAAGATCAGTCCCATGATACCCAGCCGGAGACACTCCTCCAAGATTGAATATGATGCCTCTTCTTCTACCAAGGCTTCCGGAACTAGCCCAACTAGAAGGAGGCACAGTAAGTCGCCATACAAGCCACACAAAGGTGAAGCGGGTTCCAATATTCGTAGGAATGTTAGTCCTCTATCGAAATCTGAGCGTTGGAGAAATATTTCTCCATATAAACTTGCAAAAGAGCACAATGCAATTTTGGAAATTGAGACTATGAGTTCGAATAGAAAGCAAAATCACAGAATGCATGATAAGCATACGAGTTCCGAGGTGAAGGGAGCTGATTCACAGCTTGCTGAAGTTAGTAGAACGAGTGAGAGGCCAAACTCCAGTCATAGATCAGCATCTGCCCCAAGAACAAAAGCAGCAGAGAAGGACAGACAGATCAACTATGGCCGTCTGGAGCAAAGAAGTGAAAGAACCCCCTCACCGTTGGCAAAGAGCACGGCTCGGAAACAGATTGAATCTTCCCCCAAGAAAGGTCCCTCAGTCAGCGAAATCAACGTAATGGTGGCTACTGAAAGGCTCGCCAGAGGAGGAGTCCGTGATTTTTCGAAGTTCGACAGCACGGACTCCAATTTACCTGGGGATATCTTTTTCTCCCATGATTACACAGCCTTGGCTTTGCAGAAGAATGTATTGCAAAAAAACAATGTTTTTGAAAGCAGATTTCCCTCAAACCCAAATCCCAATACAATCACCAAAAGAAATTTGGCCACTAATCAAAGAAGCAGAGGCAATGATATTTTTTATCAGAACACTCAAGGGAATTTGTCCAGTACTGTTCTATCAGGAACAGCTCCCAGCTCTGCTGTAAGCAGAGAGAGTAGTGGTAGAGTCAGCACGGAGAGTAGTAAGATGAGTGATGCTAGTGGGAGCTTGAAAAAATTTACAGCCAACAGAAGAAAGAGCCATTCAGATGCCTGGTTTGCTTGCATGAGGAAGGGGCCTTGCAAAACCAGAAAATCACCTGAAAAGAGAGACGTTGATGAAACATCATTTATTCAGAAGGCACTTGTGGTGGAAAACCTGAGACAATTTTGGGCTGATAAGCATCGGCCTGCTTCCTTGAATGGTTTCACGTTGCACAAACAAGAAGCTCAACTTCTCAAGCAACTCGTATCTAGTGATATCTGTCCACATGTTCTTTTCAAAGGACCTTCTGGTTCAGGGAAGAAAGCACTAACTATGGCTCTTTTGCGTGAAATATATGGTGATGCATCTTGGAATGAAAAAAGGCCCATGCAAGTAGTGGTACCTTTAACATCCAGTGCTCATCATGTGGAGCTTAATGTTAACTTGGAACCATATGCTAGACATGCATTGATGGCTATAGTGAAACAAATCAGAAGCAATTGTGAAATCACCCCCGAAATTATGGAGGTTCTTATTCAGATAGCAAGGAAGGAGGACTTTGACCTACCCATGAGCTTTGCTGCTAAGATTGCCACAAAATCAAAGCAGGACCTGAGGAAAGCAATCATGGCTCTTGAAGCGTGCAAAGCACACAACTATCCTTTCCTTGATGACCAACCAATTCCACTTGGATGGGAAGAGGTCCTGGTAGAACTAGCTGCTGAAGTCTTAGTTGATCCATCACCTAACAGATTGTTTTATTTACGGGGAAAAATTCAAAAGCTTCTTGTGGATTTTGTTCACCCCAAACTGATTCTTCAGGATAAGAGACTTCCAGCAGGAACAAGTGCTTTACTGAAATTAGAAGAATTTGTGGCCAAGTTCATGAGCATACGCAGGAAGAGTTTGGGCAACCGTCAGTACACATAA 2010 0.4453 MENSTRYGRTSLPHFPPSKSRRSGYEPSDTETDWQDSPWRDRNETNGPLRSELPRTPFDPLPKISPMIPSRRHSSKIEYDASSSTKASGTSPTRRRHSKSPYKPHKGEAGSNIRRNVSPLSKSERWRNISPYKLAKEHNAILEIETMSSNRKQNHRMHDKHTSSEVKGADSQLAEVSRTSERPNSSHRSASAPRTKAAEKDRQINYGRLEQRSERTPSPLAKSTARKQIESSPKKGPSVSEINVMVATERLARGGVRDFSKFDSTDSNLPGDIFFSHDYTALALQKNVLQKNNVFESRFPSNPNPNTITKRNLATNQRSRGNDIFYQNTQGNLSSTVLSGTAPSSAVSRESSGRVSTESSKMSDASGSLKKFTANRRKSHSDAWFACMRKGPCKTRKSPEKRDVDETSFIQKALVVENLRQFWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYGDASWNEKRPMQVVVPLTSSAHHVELNVNLEPYARHALMAIVKQIRSNCEITPEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAIMALEACKAHNYPFLDDQPIPLGWEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVDFVHPKLILQDKRLPAGTSALLKLEEFVAKFMSIRRKSLGNRQYT* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1160 669 Gene3D - 411 532 IPR027417 -
Vvi4g1160 669 Gene3D - 591 635 - -
Vvi4g1160 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 577 IPR027417 -
Vvi4g1160 669 MobiDBLite consensus disorder prediction 167 192 - -
Vvi4g1160 669 MobiDBLite consensus disorder prediction 148 240 - -
Vvi4g1160 669 MobiDBLite consensus disorder prediction 193 209 - -
Vvi4g1160 669 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 423 524 - -
Vvi4g1160 669 SUPERFAMILY post-AAA+ oligomerization domain-like 590 658 IPR008921 GO:0003677|GO:0006260
Vvi4g1160 669 Gene3D - 533 587 - -
Vvi4g1160 669 MobiDBLite consensus disorder prediction 149 166 - -
Vvi4g1160 669 MobiDBLite consensus disorder prediction 24 48 - -
Vvi4g1160 669 MobiDBLite consensus disorder prediction 337 368 - -
Vvi4g1160 669 FunFam replication factor C subunit 3 531 588 - -
Vvi4g1160 669 MobiDBLite consensus disorder prediction 1 124 - -
Vvi4g1160 669 MobiDBLite consensus disorder prediction 210 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1160 Vvi-Chr4 18551004 18557058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1160 466 663 Core DNA Replication Machinery Family AT5G27740 33.036 7.95e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1160 K10756 - vvi:100852980 1065.83