Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1156 ATGAATGATCTCATGACAAAATCGTTCTTAAGTTATGTGGAACTAAAGAAACAAGCAGAGATGGATCTTGAAGCAGAAGCAGAAGCAGACATAGAAATAGGCAAACTCAAGCCTAAAGATGAAGAGAACCTCTCTCAGTTCTTTGAAGAAGTGGCCGCTATCAAGACTGTCATGGAAGAGATTACTAATCTCGTCCTTGATCTTCACAACCTGAATGAAGAGACTAAATCAACTCACAGCGCTGAGGTCCTTCGTGGCCTAAGAGACCGCATGGACTCTAATGCACTCACTATTCTTCGCAAGGCCAAAGTTGTGAAGGCAAGACTAGAAGCTATAGACAAATCAAATGTAAGAAACCGCAGAATATCAGAAGCATATAGAGAAGGAAGTCCAGTTGATAGGACGAGAATGTCGGTCACGAATGGATTGAGAAGTAAGCTTAGGGACATGATGAATGATTTCCATTCACTGCGGGAGAGGATCTTATGGGATCATAGAGAAACTCTCAAGAGAAGGTACTATAATGCCACTGGAAGTGAAGCAAGCGAGGAAGTGGTGGAGAAAATGATGACAGGAAGCGTACAAATAGAAGCATTTGAAGGAAAAACAGGAGGGGATTTGGTGAACAGAGAGAGGAATGAAGCCTTGAGGGAGATTCAGAGAAGCTTGGATAAGCTTCGTCAAGTATTACTTGACATGGCTGTTTTGGTTGGGAGTCAAGGCGAGAAGATGGATGATATAGAGGAGAATGTGGCAATTGCAGGGAACTTCATCAGTGGTGGAACCAATAGTCTTGTCTATGCCAAGCAGATGAAGAAGGGGAAGAAATGGGTGTATTGGGTTTGGGCTGTGGGGCTCATCATATTGCTGGTGTGCTTCATTTCAATGCTCACTTCTTAA 900 0.4311 MNDLMTKSFLSYVELKKQAEMDLEAEAEADIEIGKLKPKDEENLSQFFEEVAAIKTVMEEITNLVLDLHNLNEETKSTHSAEVLRGLRDRMDSNALTILRKAKVVKARLEAIDKSNVRNRRISEAYREGSPVDRTRMSVTNGLRSKLRDMMNDFHSLRERILWDHRETLKRRYYNATGSEASEEVVEKMMTGSVQIEAFEGKTGGDLVNRERNEALREIQRSLDKLRQVLLDMAVLVGSQGEKMDDIEENVAIAGNFISGGTNSLVYAKQMKKGKKWVYWVWAVGLIILLVCFISMLTS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1156 299 FunFam Syntaxin 132 206 298 - -
Vvi4g1156 299 Pfam Syntaxin 46 241 IPR006011 GO:0016020
Vvi4g1156 299 Gene3D - 39 172 - -
Vvi4g1156 299 CDD SNARE_syntaxin1-like 210 266 - -
Vvi4g1156 299 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Vvi4g1156 299 CDD SynN 44 196 IPR006011 GO:0016020
Vvi4g1156 299 Gene3D - 207 298 - -
Vvi4g1156 299 SMART SynN_4 39 166 IPR006011 GO:0016020
Vvi4g1156 299 PANTHER SYNTAXIN 41 289 IPR045242 -
Vvi4g1156 299 SMART tSNARE_6 201 268 IPR000727 -
Vvi4g1156 299 SUPERFAMILY t-snare proteins 43 261 IPR010989 GO:0016020|GO:0016192
Vvi4g1156 299 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 41 172 - -
Vvi4g1156 299 Coils Coil 209 229 - -
Vvi4g1156 299 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1156 Vvi-Chr4 18535065 18535964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1156 1 299 SNARE and Associated Proteins AT2G18260 60.194 1.05e-124 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1156 K08486 K02201 vvi:100244526 568.54