Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1153 ATGTCCTTCAAAAGCATTGTTCGTGAGCTAAAGGAAATGAAAGATGGAATTGGGAACATTTCTAGGCGTGGGGTAGAAGGGAAGCATTGGCGCAGACGAACAAGGTCATATATTGCCCCTGATCAAGGCCCCCTCTCTGGAGCCCTCCAACAGGGTCAGTGGGCGAATTTACCACCTGAATTGCTTTTGGATATAATCCAGAGGGTAGAAGAGAGTGAGACGTCATGGCCTGCTAGGAATGTTGTTGTATTTTGTGCTTCAGTTTGTAGGTCATGGAGGGAGATTACAAAGGAGATTGTCAAAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGCCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCCACCTCTACATATCTTTTGTACTTTGGCCTGACACCTTCTGAGGGCCAGAGTGATAAACTGTTGCTTGCAGCCAGAAGGATCCGAAGGCCAACTAGCACAGATTTTGTGATATCTCTGGTTGCAGATGATTTTTCTCGAGCCAGCAATACATATGTTGGAAAACTGAGATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATATGATACAGCAGTTCAACCTAATAGTCGGTCAAGTCGACGGTTCCACTCTAAGCAGGTATCTCCAAGAGTACCTGCATGTAACTACAGTGTGGCCACCATTTCCTATGAACTCAATGTCCTTCGCACCAGAGGACCTAGGAGAATGCAATGCACCATGCATTCCATTCCTATTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCAACATCATTCCCACAACCCTTTGATGAGCAATTTTCTCCTTCACCATGTTTGAGAAAAAAGGATCCAGTCACAGACATATGCTCCACAAGCCTGTCAGAGCCATTAGTACCTGTCCAGGGATCAGGAGATCCGCTGATTCTTAAAAACAAAGCACCTAGATGGCATGAACATCTCCAGTGCTGGTGCCTAAATTTTAGAGGGCGTGTTACAGTGGCATCTGTCAAAAATTTCCAGCTTGTGGCATCAGTTGAGCCATCCCACAACGTTTCTGCTGTAGAGCAAGACAAGGTAATATTGCAGTTTGGGAAGATTGGCAAAGATATCTTCACTATGGATTATCGCTATCCACTTTCTGCCTTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACTAAACCAGCCTGTGAATAA 1242 0.4565 MSFKSIVRELKEMKDGIGNISRRGVEGKHWRRRTRSYIAPDQGPLSGALQQGQWANLPPELLLDIIQRVEESETSWPARNVVVFCASVCRSWREITKEIVKTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRATSTYLLYFGLTPSEGQSDKLLLAARRIRRPTSTDFVISLVADDFSRASNTYVGKLRSNFLGTKFTIYDSQPPYDTAVQPNSRSSRRFHSKQVSPRVPACNYSVATISYELNVLRTRGPRRMQCTMHSIPISSIQEGGTAPTPTSFPQPFDEQFSPSPCLRKKDPVTDICSTSLSEPLVPVQGSGDPLILKNKAPRWHEHLQCWCLNFRGRVTVASVKNFQLVASVEPSHNVSAVEQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 414
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1153 413 CDD F-box_AtTLP-like 54 98 - -
Vvi4g1153 413 FunFam Tubby-like F-box protein 111 413 - -
Vvi4g1153 413 PANTHER TUBBY-RELATED 50 411 - -
Vvi4g1153 413 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vvi4g1153 413 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Vvi4g1153 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Vvi4g1153 413 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vvi4g1153 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Vvi4g1153 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Vvi4g1153 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Vvi4g1153 413 SUPERFAMILY Tubby C-terminal domain-like 103 413 IPR025659 -
Vvi4g1153 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Vvi4g1153 413 Pfam Tub family 115 408 IPR000007 -
Vvi4g1153 413 Gene3D - 48 100 - -
Vvi4g1153 413 Pfam F-box domain 54 101 IPR001810 GO:0005515
Vvi4g1153 413 Gene3D Tubby Protein; Chain A 112 413 IPR025659 -
Vvi4g1153 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Vvi4g1153 413 SUPERFAMILY F-box domain 47 98 IPR036047 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi4g1153 Vvi-Chr4 18518784 18520671 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1153 1 413 TUB Transcription Factor Family AT2G18280 63.133 0.0 507
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi4g1153 Tub 2.6e-110 CL0395
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1153 K19600 - vvi:100261485 843.188