Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g1153 | ATGTCCTTCAAAAGCATTGTTCGTGAGCTAAAGGAAATGAAAGATGGAATTGGGAACATTTCTAGGCGTGGGGTAGAAGGGAAGCATTGGCGCAGACGAACAAGGTCATATATTGCCCCTGATCAAGGCCCCCTCTCTGGAGCCCTCCAACAGGGTCAGTGGGCGAATTTACCACCTGAATTGCTTTTGGATATAATCCAGAGGGTAGAAGAGAGTGAGACGTCATGGCCTGCTAGGAATGTTGTTGTATTTTGTGCTTCAGTTTGTAGGTCATGGAGGGAGATTACAAAGGAGATTGTCAAAACTCCAGAGGAATGTGGAAGGCTCACATTCCCCATTTCATTGAAGCAGCCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCCACCTCTACATATCTTTTGTACTTTGGCCTGACACCTTCTGAGGGCCAGAGTGATAAACTGTTGCTTGCAGCCAGAAGGATCCGAAGGCCAACTAGCACAGATTTTGTGATATCTCTGGTTGCAGATGATTTTTCTCGAGCCAGCAATACATATGTTGGAAAACTGAGATCCAATTTTCTGGGCACGAAGTTCACAATATACGACAGCCAACCTCCATATGATACAGCAGTTCAACCTAATAGTCGGTCAAGTCGACGGTTCCACTCTAAGCAGGTATCTCCAAGAGTACCTGCATGTAACTACAGTGTGGCCACCATTTCCTATGAACTCAATGTCCTTCGCACCAGAGGACCTAGGAGAATGCAATGCACCATGCATTCCATTCCTATTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCAACATCATTCCCACAACCCTTTGATGAGCAATTTTCTCCTTCACCATGTTTGAGAAAAAAGGATCCAGTCACAGACATATGCTCCACAAGCCTGTCAGAGCCATTAGTACCTGTCCAGGGATCAGGAGATCCGCTGATTCTTAAAAACAAAGCACCTAGATGGCATGAACATCTCCAGTGCTGGTGCCTAAATTTTAGAGGGCGTGTTACAGTGGCATCTGTCAAAAATTTCCAGCTTGTGGCATCAGTTGAGCCATCCCACAACGTTTCTGCTGTAGAGCAAGACAAGGTAATATTGCAGTTTGGGAAGATTGGCAAAGATATCTTCACTATGGATTATCGCTATCCACTTTCTGCCTTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACTAAACCAGCCTGTGAATAA | 1242 | 0.4565 | MSFKSIVRELKEMKDGIGNISRRGVEGKHWRRRTRSYIAPDQGPLSGALQQGQWANLPPELLLDIIQRVEESETSWPARNVVVFCASVCRSWREITKEIVKTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRATSTYLLYFGLTPSEGQSDKLLLAARRIRRPTSTDFVISLVADDFSRASNTYVGKLRSNFLGTKFTIYDSQPPYDTAVQPNSRSSRRFHSKQVSPRVPACNYSVATISYELNVLRTRGPRRMQCTMHSIPISSIQEGGTAPTPTSFPQPFDEQFSPSPCLRKKDPVTDICSTSLSEPLVPVQGSGDPLILKNKAPRWHEHLQCWCLNFRGRVTVASVKNFQLVASVEPSHNVSAVEQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* | 414 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g1153 | 413 | CDD | F-box_AtTLP-like | 54 | 98 | - | - | |
Vvi4g1153 | 413 | FunFam | Tubby-like F-box protein | 111 | 413 | - | - | |
Vvi4g1153 | 413 | PANTHER | TUBBY-RELATED | 50 | 411 | - | - | |
Vvi4g1153 | 413 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Vvi4g1153 | 413 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Vvi4g1153 | 413 | PRINTS | Tubby superfamily signature | 391 | 413 | IPR000007 | - | |
Vvi4g1153 | 413 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Vvi4g1153 | 413 | PRINTS | Tubby superfamily signature | 323 | 340 | IPR000007 | - | |
Vvi4g1153 | 413 | PRINTS | Tubby superfamily signature | 341 | 357 | IPR000007 | - | |
Vvi4g1153 | 413 | PRINTS | Tubby superfamily signature | 370 | 389 | IPR000007 | - | |
Vvi4g1153 | 413 | SUPERFAMILY | Tubby C-terminal domain-like | 103 | 413 | IPR025659 | - | |
Vvi4g1153 | 413 | ProSitePatterns | Tub family signature 2. | 398 | 413 | IPR018066 | - | |
Vvi4g1153 | 413 | Pfam | Tub family | 115 | 408 | IPR000007 | - | |
Vvi4g1153 | 413 | Gene3D | - | 48 | 100 | - | - | |
Vvi4g1153 | 413 | Pfam | F-box domain | 54 | 101 | IPR001810 | GO:0005515 | |
Vvi4g1153 | 413 | Gene3D | Tubby Protein; Chain A | 112 | 413 | IPR025659 | - | |
Vvi4g1153 | 413 | ProSitePatterns | Tub family signature 1. | 341 | 354 | IPR018066 | - | |
Vvi4g1153 | 413 | SUPERFAMILY | F-box domain | 47 | 98 | IPR036047 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi4g1153 | Vvi-Chr4 | 18518784 | 18520671 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi4g1153 | 1 | 413 | TUB Transcription Factor Family | AT2G18280 | 63.133 | 0.0 | 507 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Vvi4g1153 | Tub | 2.6e-110 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g1153 | K19600 | - | vvi:100261485 | 843.188 |