Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1151 ATGTTACACTGTCTACGCTCGCCGGAGGATTTTGCTGCCATAGGTAGGCCCGAAACTATGAAGTGGCTACATCAGCCACAGAAGTTTCAGCAACCTTCATTCCACAGCAAATCTTTTGGATTTTCTCAATCTTCCCAGATTGATGACTTGAATTCCGTACTTAGAGAGATACCTAATAGGAGTATGAAGGCGGAGAATAGTTGGGACAATGGTTTGCCGGGTTTGGGCGATTTTCCCACTGCCGGAACCGATTTTCGGGGACATGGTATGGGTTTTGAGTTGCCGGAAATTGCAGGTAGCTCTCTTGAGATGGATCATTCGATTTCGAGGACTTCTAGTTGCCCGCTACCGGATCTGGGGGCAGCAACATCCGTGGATGGTAGAGAGTTGGCTGGAAGAAACAGTGTGAAGAAGAGAAAAGCAGAGGTTGCTTTAACAGAGGAGTGCAAAGACCAGAAGATTAAAAGGGATGAGGAAGAGGAGGAATCTAAGATCGAAGAGAAACACAGTGAGATTTCCCCAAATGCTTCAAAGGTTTCTGGGTCTCCTAAGCCTGATTACATTCATGTGCGGGCGCGTCGTGGGCAGGCCACTGATAGCCATAGCTTAGCAGAAAGAGCAAGGAGAGAAAAAATCAGTAAGAAGATGAAGTATTTACAAGATTTAGTGCCTGGATGTAACAAAATCACAGGCAAGGCTGGTATGCTGGACGAAATTATCAACTATGTTCAATCTCTCCAAAGACAAGTAGAGGTACTGCCACAGCCACAGATTTATCAGAGACCTTGTTTCTTCTGCCTATGGTTTCTAACCTTCATTCTGAGAGCTTCTCTAATTGGGTCTATTTATTATGTCTTTTAG 861 0.4495 MLHCLRSPEDFAAIGRPETMKWLHQPQKFQQPSFHSKSFGFSQSSQIDDLNSVLREIPNRSMKAENSWDNGLPGLGDFPTAGTDFRGHGMGFELPEIAGSSLEMDHSISRTSSCPLPDLGAATSVDGRELAGRNSVKKRKAEVALTEECKDQKIKRDEEEEESKIEEKHSEISPNASKVSGSPKPDYIHVRARRGQATDSHSLAERARREKISKKMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEVLPQPQIYQRPCFFCLWFLTFILRASLIGSIYYVF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1151 286 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 73 253 IPR024097 GO:0006355
Vvi4g1151 286 CDD bHLH_AtBPE_like 186 253 - -
Vvi4g1151 286 Pfam Helix-loop-helix DNA-binding domain 200 247 IPR011598 GO:0046983
Vvi4g1151 286 Gene3D - 193 261 IPR036638 GO:0046983
Vvi4g1151 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 246 IPR011598 GO:0046983
Vvi4g1151 286 SMART finulus 202 252 IPR011598 GO:0046983
Vvi4g1151 286 MobiDBLite consensus disorder prediction 130 184 - -
Vvi4g1151 286 Coils Coil 142 162 - -
Vvi4g1151 286 FunFam Transcription factor BPE 194 256 - -
Vvi4g1151 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 264 IPR036638 GO:0046983
Vvi4g1151 286 MobiDBLite consensus disorder prediction 131 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1151 Vvi-Chr4 18512510 18513601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1151 78 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G18300 53.403 1.81e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi4g1151 HLH 9.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1151 - - vvi:100240994 497.278