Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1150 ATGGGGACTGATGCTACAGAAGTAGTGCCAACACTGCCTCGTCCTAATGCTGTAAAGGTGCATCAGTTAATGTGCACAGACCTAATGAATTTGGTTGATCGAGTCTTAAAGATATTACCAGAGATAGAAGCAGCTCGACCATGCAAAGCAGGAAGGGATGCATTGTGCTCAATAAACCTAGCAATTGAGAAAGCCAAGTCAGTCCTGCTGGACTGCAGCGAGTCTAGTAAGCTCTATTTGGCAATATCAGGCACTGTAATAGTGTTGAAATGTGAAAGAATAAGGAGCTTACTGGAGAAAAATTTAAGCCAAATTCAGACTATGGTTCCGTGTATGTTGAATGCACAGATTTCTCGAATAGTAGAGGATCTTAGGGCAGTAACGTTTTCCTTGGATTCATCTGAAGAAGAGGCTGGGAAGGTCATGCAAACATTGATGCGCCAGGAATCAGCTCAATCTGATTTGATAGAGAATTCAAAGATTGAGGCTCTTCAAATTGCAGCTTCAAGGCTTCATATTACATCTCAAAGAGATCAATTGATCGAGAAAAGATCCATTAGAAAGCAGCTTGAGAAAAGCAGCAATAATGAAAGAAAGAATCAAATGTTAATATACCTTTTGAATCTGCTGAAGAAGTATGGAAACATTATTGTGGAAGTGCAAATGGAGAATGCTGATGATCATCATGAAAGACCTTTTCCATTTCCAAACTCTTGTGGAGCTTCTTTATGTGGTCAATCTGTTGAAGTAGGATCTTGCTTAGGATATGGGCAACATGAGGCTCAAACTGACGTGTTTAGGAGGCCAATACCACCTGAGGAATTCATGTGCCCCATATCTTCAAGATTGATGTATGATCCGGTGATCATTGATTCGGGAGTAACATTTGAAAGGATGTGGATCCAGAAGTGGTTTGATGAGGGTCATGATACATGTCCACAAAGTAAAAAGAAGCTGGCCAAAATGTTGTTGACTCCGAATACTGCCATGAAAGAACTAATCTTAAAGTGGTGCATGAAGCATGGAATCCCTGAACCTGGCCCATGTTTAGAACCACCAGCATTTAACACATGGGAATATTCTTCTACTTCCATCACAAGCCTCAGTAATTCTATGAATGATCTAAACCTGCCAATAGATATCAGCGGAGTATCACTTGGATCTTTAGATAACAGTTACAGTTCAGACTCCTCACATATTAATATCAGAGATGGGTTAAATTTGATTACAGTGAAGACTAGTGATGAATCTCACAGATGTCATGGTCATGCAGATAAACCTGAGACAGATCTGAAGTTTTTATCTGAACTTGCTACACATCCATGGGAGTCCCAATACCAGGTGGTTGAAGATGTAGAAAAAGACTTGAAAGGCGATGATCAAGCTTGGCATTCACTATCATCTAAGAATTTTGTTGAACCACTGATTAGGTTTCTAAAGGATGCTTGTGAGCAGCATGATGTAAAAGCTCAGAGAGTTGGATCTCAGTTGTTATTGGCATTTGTCAGCAAAAGCAGAAGTGGTGTATCATACTTAGGAGAAGATGCATTTAATCTGATGACATCTCTTCTAGATTCAGAAGTAACTGAAGAAGCTCTTGCCATACTGGAAGTGTTGTCTAGCAACTTGAATTGTGGATCTAAAATTGCTGCAGCTGGCACTCTCACTTCTGTCCTAAAGATCCTGGACACCCAAAGAGAATTTCAGGAACCAGCCATTAAAATACTATATAATATGTCCTCAAAAAGTGATGTTCGTTCCTTCATTGTGTCTTTGGACTGCATCCCTAAGTTGGTCCCATTCTTGAAGGATACTCGTCTTGCAAAATATTGTATAGTTATTTTGAAAAATTTGTGTTATACCGAAGAGGGCAGGGTTTCTGTTGCTGGAACTGATGGATGCATAGCTTCCATTGTTGAATTACTTGAAAATGGAAGCTGTGAGGACCAAGAGCATGCAATGGCTATTCTCCTTTTTTTGTGCGCTCAACGTGTTCAATATTGCCAGTTGGTTATGGAAGAGGGTGCTGATGTCTTTACTTCGCTTGCCAGTATATCTCTCAATGGGAATGACAATGGAAAGGTGAAGGCAAATGAATTGCTTCGACTCTTAAGAGATATTGATCATAGTGATGTAAAAGAAAGTCCTGGATCCAATCTTGTTGTCCCTGTAGACTCCAGCAACTACCTTAAAGAGAAGAAATCATCTTCCAAGTCATCAGGAATTTTTGGAAGGATACCAATATTCTCAAAGCGCAGGTCTGGTTCACCAAAAAGAAAGAAATGA 2286 0.3994 MGTDATEVVPTLPRPNAVKVHQLMCTDLMNLVDRVLKILPEIEAARPCKAGRDALCSINLAIEKAKSVLLDCSESSKLYLAISGTVIVLKCERIRSLLEKNLSQIQTMVPCMLNAQISRIVEDLRAVTFSLDSSEEEAGKVMQTLMRQESAQSDLIENSKIEALQIAASRLHITSQRDQLIEKRSIRKQLEKSSNNERKNQMLIYLLNLLKKYGNIIVEVQMENADDHHERPFPFPNSCGASLCGQSVEVGSCLGYGQHEAQTDVFRRPIPPEEFMCPISSRLMYDPVIIDSGVTFERMWIQKWFDEGHDTCPQSKKKLAKMLLTPNTAMKELILKWCMKHGIPEPGPCLEPPAFNTWEYSSTSITSLSNSMNDLNLPIDISGVSLGSLDNSYSSDSSHINIRDGLNLITVKTSDESHRCHGHADKPETDLKFLSELATHPWESQYQVVEDVEKDLKGDDQAWHSLSSKNFVEPLIRFLKDACEQHDVKAQRVGSQLLLAFVSKSRSGVSYLGEDAFNLMTSLLDSEVTEEALAILEVLSSNLNCGSKIAAAGTLTSVLKILDTQREFQEPAIKILYNMSSKSDVRSFIVSLDCIPKLVPFLKDTRLAKYCIVILKNLCYTEEGRVSVAGTDGCIASIVELLENGSCEDQEHAMAILLFLCAQRVQYCQLVMEEGADVFTSLASISLNGNDNGKVKANELLRLLRDIDHSDVKESPGSNLVVPVDSSNYLKEKKSSSKSSGIFGRIPIFSKRRSGSPKRKK* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1150 761 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Vvi4g1150 761 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Vvi4g1150 761 SUPERFAMILY RING/U-box 271 346 - -
Vvi4g1150 761 CDD RING-Ubox_PUB 272 319 IPR045210 -
Vvi4g1150 761 PANTHER U BOX DOMAIN-CONTAINING 23 706 - -
Vvi4g1150 761 Gene3D - 431 719 IPR011989 -
Vvi4g1150 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Vvi4g1150 761 SUPERFAMILY ARM repeat 434 702 IPR016024 -
Vvi4g1150 761 MobiDBLite consensus disorder prediction 730 761 - -
Vvi4g1150 761 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1150 Vvi-Chr4 18501214 18506824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1150 15 744 U-box Gene Family AT4G36550 37.949 1.40e-136 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1150 - - vvi:100251240 1446.41