Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1149 ATGGCATCCAACTCTATGACTTCTTCACGTACCTCTGGCTCCTCTTGGACGCCCAAGCAAAACAAACTATTTGAAAAGGCACTGGCAAAGTATGACAAGGACACCCCTGACCGCTGGCAGAATATTGCCAAGGCCGTGGGTGGGAAATCTGCGGAGGAAGTGAAAAGGCACTATGAAATCCTCATAGAGGATGTCAAGCACATCGAGTCCGGCAAAGTTCCATTTCCCAATTACAGGTGA 240 0.4875 MASNSMTSSRTSGSSWTPKQNKLFEKALAKYDKDTPDRWQNIAKAVGGKSAEEVKRHYEILIEDVKHIESGKVPFPNYR* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1149 79 CDD SANT 15 58 IPR001005 -
Vvi4g1149 79 FunFam Transcription factor SRM1 8 75 - -
Vvi4g1149 79 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Vvi4g1149 79 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Vvi4g1149 79 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 79 IPR044636 GO:0003700
Vvi4g1149 79 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Vvi4g1149 79 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Vvi4g1149 79 Gene3D - 6 75 - -
Vvi4g1149 79 SMART sant 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1149 Vvi-Chr4 18490558 18490797 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi4g1149 Myb_DNA-binding 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1149 - - vvi:100246097 152.91