Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1146 ATGGCTGAGCAGCAAGCAGCAGAGATCAGAGGGCGTAAAATAATGAGGGATATCCAAGGAGTCTATCACCGTCACCTTCATCATCACCAATTCAATCTACAACAACAAACACAACACGGGGAAGTAGGGGATCCAGACCCAGATCCAGATCCTGTTTCAGCTACAATTGCAGTCTCCGGTGCAACCGCCACACCGATTACCGGTGGATCAAATCCAAAAGTAGCAGCAGCGCCGCCACATCCACCTCCTCAATCAGCAGCCTCAATTCGATATAGAGAATGCCTCAAGAATCATGCGGCGAGCATGGGCGGGCACGTCTTCGATGGATGCGGAGAATTCATGCCAAGCGGAGAGGAAGGGACTCTAGAAGCCTTGAAATGTGCAGCTTGCGATTGCCACCGCAATTTTCATCGCAAAGAGATCGATGGAGAGTCGCAGCCCACCGCCAATTGTTACTATACTTGTAACCCCAACACTAACAGTAGCAGAAGAAATACAATAGCTCCTCAGCTCCCTCCATCGCATGCTCCACTGCCCCATCTTCATCAGCACCATAAATACTCCCATGGTCTATCGGGCAGTCCATTAATGAGCCCAATTCCACCAATGATGATGGCATTTGGTGGCGGCGGAGGAGCTCCCGCAGAGTCATCCAGCGAAGATCTAAACATGTTTCAGTCCAATGTTGGAATGCACCTGCAGCCGCAGCCAGCGTTTGCGCTCTCAAAGAAGAGGTTTCGAACAAAATTCTCACAAGAACAAAAAGATAAGATGCAGGAGTTTGCGGAGAAGTTGGGATGGAAGATTCAGAAGCAAGAAGAACAGGAAGTCCAGCAGTTTTGTTCAGATGTGGGTGTAAAGAGACAGGTTTTCAAGGTCTGGATGCACAACAACAAACAAGCCATGAAGAAGAAGCAACTAAAAACATTGGCAACATCAACCTGTATTATTTTTCTACTCGAAACATATTGGGATCTTACCCTTTCTTCCTTCCATATTACTAGCTCAAAAAGCTCCTCCCCAGAAAGAGAAAGGGAAAGAAAAGAAGAAACTAACGACAAAAATTGCACGTATTTTCCTCTTTGCTTGGTGGTCATGGACTCATGGGAGGTAAGTCTCACGTACGAGTCTCTTTTTACTAATCTACTTTACTACTACTGTACTATCATCTCTTGCATTAATCCCATCTGTCCATTTAATCGCCAATTCTTTGGTTCCTTAAAACCCTACCACATTCTTCTATCTTTCTCCACAGTCGAAGTGAAACAACTGGACTGCTCCTGTCAGCACACTGGCATATGA 1302 0.4616 MAEQQAAEIRGRKIMRDIQGVYHRHLHHHQFNLQQQTQHGEVGDPDPDPDPVSATIAVSGATATPITGGSNPKVAAAPPHPPPQSAASIRYRECLKNHAASMGGHVFDGCGEFMPSGEEGTLEALKCAACDCHRNFHRKEIDGESQPTANCYYTCNPNTNSSRRNTIAPQLPPSHAPLPHLHQHHKYSHGLSGSPLMSPIPPMMMAFGGGGGAPAESSSEDLNMFQSNVGMHLQPQPAFALSKKRFRTKFSQEQKDKMQEFAEKLGWKIQKQEEQEVQQFCSDVGVKRQVFKVWMHNNKQAMKKKQLKTLATSTCIIFLLETYWDLTLSSFHITSSKSSSPERERERKEETNDKNCTYFPLCLVVMDSWEVSLTYESLFTNLLYYYCTIISCINPICPFNRQFFGSLKPYHILLSFSTVEVKQLDCSCQHTGI* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1146 433 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 75 300 - -
Vvi4g1146 433 FunFam Zinc-finger homeodomain protein 2 231 304 - -
Vvi4g1146 433 Pfam ZF-HD protein dimerisation region 89 141 IPR006456 -
Vvi4g1146 433 NCBIfam homeobox domain, ZF-HD class 243 300 IPR006455 -
Vvi4g1146 433 ProSiteProfiles 'Homeobox' domain profile. 241 305 IPR001356 GO:0003677
Vvi4g1146 433 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 90 141 IPR006456 -
Vvi4g1146 433 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 91 140 IPR006456 -
Vvi4g1146 433 Gene3D - 233 304 - -
Vvi4g1146 433 SUPERFAMILY Homeodomain-like 240 304 IPR009057 -
Vvi4g1146 433 MobiDBLite consensus disorder prediction 34 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1146 Vvi-Chr4 18450985 18454288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1146 64 307 ZF-HD Transcription Factor Family AT2G18350 51.429 6.30e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi4g1146 ZF-HD_dimer 8.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1146 - - vvi:100258112 758.829