Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1142 ATGGCGGGTCCATGTACATGTGGGCTGTTCCACAATCAGAGCAATTCTTTCTCTATGCTCTTCTCCATGCCCAATCACAAGCCTTTCGATGAAACAGACATGTATCCGTTCACGTCCTCCTCTTCTTCTTCCGTGGATTGCACTCTTTCTCTCGGAACTCCATCCACTCGTTTAACGGACAATGATGAAAAGCGAATGCACCACGATCGACGGGCTGGTTCTTGTGTGTCTAACTTTTGCTGGGACATATTACACAGCGGCAGCAGCAGCAACAACTCCGCCGGCGATCCCCTCCTCGCTCGCCGTTGTGCTAACTGCGACACCACTTCTACCCCACTTTGGAGGAACGGTCCAAGAGGCCCAAAGTCGCTGTGCAATGCCTGTGGAATTCGATTCAAGAAAGAAGAGAGGAGAGCCACAGCCGCCGCCGCCACCACTGGTGCAACTGCAGGAGTAATGGAACCGCAACACATAATGATAAGCCATCACAACAATTCATGGGTTCACCACTCTCAGACCCAGAAAATGCCCTGCCTCTCTCCGGCCATGGGCAACGAATTCAGGTTCATCGAGGACGACGATCGAGATTCCGATACAGGCATTCCGTTCCTCTCTTGGCCTTTTGAACTGGAGTTTACCTTACCTGGTCTGAAGCTATTGGCCCTCTTTATTTTCCTGAATTACATAACTGAACAAAGGTCCCAGCACATTTCATTCTGGTGA 723 0.5062 MAGPCTCGLFHNQSNSFSMLFSMPNHKPFDETDMYPFTSSSSSSVDCTLSLGTPSTRLTDNDEKRMHHDRRAGSCVSNFCWDILHSGSSSNNSAGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAAATTGATAGVMEPQHIMISHHNNSWVHHSQTQKMPCLSPAMGNEFRFIEDDDRDSDTGIPFLSWPFELEFTLPGLKLLALFIFLNYITEQRSQHISFW* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1142 240 ProSitePatterns GATA-type zinc finger domain. 103 128 IPR000679 GO:0006355|GO:0043565
Vvi4g1142 240 CDD ZnF_GATA 102 134 IPR000679 GO:0006355|GO:0043565
Vvi4g1142 240 ProSiteProfiles GATA-type zinc finger domain profile. 97 133 IPR000679 GO:0006355|GO:0043565
Vvi4g1142 240 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 141 - -
Vvi4g1142 240 PANTHER GATA TRANSCRIPTION FACTOR 18 3 209 IPR044272 GO:0003700|GO:0009908
Vvi4g1142 240 Gene3D - 99 174 IPR013088 GO:0006355|GO:0008270
Vvi4g1142 240 Pfam GATA zinc finger 103 137 IPR000679 GO:0006355|GO:0043565
Vvi4g1142 240 SMART GATA_3 97 149 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1142 Vvi-Chr4 18421723 18423027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1142 6 210 C2C2-Gata Transcription Factor Family AT3G50870 43.116 4.86e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi4g1142 GATA 5.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1142 - - vvi:100247862 402.905