Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1124 ATGGCATATATGTGTACAGACAGTGGAAATCTAATGGCAATTGCTCAGCAAGTGATAAAGCAGAAACAACAGCAGGAGCAACAGCAACAGCAGCAGCAGCAACAGCTTGGAGGTGTCAATTCCTTTTGCCTAAACCCTTGGACCACTACCCCTCACACTATGTCGACTGCTCCGGCTTTGGGATATGGGCTTGCCGGTGCGGGGTTTTCAGATCCTTTTCAGGTCGCCGGCACGGCGGATGCCGGTGAAGGTGGGTTTCAGTTTGCGCACTTGGAGCACCATTCCACTGGGTTTAGGTTTTCTGATTTCAGTGGAGGGGGTGGTGGCGAGTTCGACTCGGACGAGTGGATGGACAGCTTAATGGGTGGCGGTGATTCCACGGAGAGCTCAAATCTTCCTTCTGGTTGCGACGCGTGGCAAAATGATGCCGATCTCACCTTATATGGTGCCGATCCGTTCACCAGTTGTCCGAGTCGACTCAGCATAGCCTCTTCACCAACGTCAGATCTCAACCGAGTCATTTTCTCCGACGCCCAGAAGTGTACCAATCCCCCTCTTCAGCCACAGGTCCCGTCTTGGTCTCCATCGCCGTCGCCAACGCCGACTCCACCCCCACCGCCACCACCTCCTCCAGCAGTTGTAAAAGACACCAAGCCCGCCAATCCCCCACCGGCACACCTACAGAAGAACGACGTCGCCGGTGTCTCATCGGGTTCACCAGAAGCGGAGTCGGCCCCGCCAATATTGAAAGCCCTACTCGATTGTGCGCGGCTTGCAGACTCCGAACCCGATCGAGCGGTGAAATCACTGATTCGACTCAGAGAATCGGTATCAGAACATGGGGATCCGACTGAGAGAGTGGCGTTTTACTTCTCTGAAGCTCTCTACAGCAGAGTTTCTCATCAAGCAGAGAAGAGGCCCACTCTGTTCGAAACCTCTTCTGAGGAGTTTACGCTTTCGTACAAAGCTTTGAACGATGCATGCCCATATTCGAAGTTTGCGCATTTAACTGCGAACCAAGCAATCCTTGAAGCCACCGAAAGGGCGAGGAAGATTCACATAGTTGACTTTGGAATCGTTCAAGGGGTTCAGTGGGCCGCTCTTCTGCAAGCTTTGGCGACACGATCCGCCGGTAAACCCGCTAGGATTCGGATCTCCGGCATTCCTGCCCCGGCACTTGGAAAATCACCAGCGTCGTCTCTGTTCGCTACCGGAAACCGTCTTCGTGATTTCGCGAGGCTTCTTGATCTAAACTTTGAGTTTGAGCCTATTCTGACCCCGATTCAGGAGCTCAACGAATCAACCTTTCGGGTTGATCCGGATGAGGTTTTGGCTGTGAACTTCATGCTTCAGTTGTACAACCTCCTCGACGAAACCCCGGTGTCTGTCAATGCCGCTCTCCGCTTGGCCAAATCCCTCAATCCGAAAATCATGACTTTGGGCGAGTACGAAGCCTGCTTGAACGAGGTAGATTTTATCAACCGGTTCAAGAACGCATTGAGATACTACAGGGCCATATTTGATTCACTGGAGCCTAACTTGGCCAGAGACTCGTCGGACAGACTTCAAGTGGAGAGATTATTGCTCGGCCGGCGAATAGCAGGCGTTATCGGGCCGGAGGAACCAGGAACTAGACGAGAGCGAATGGAAGACAAGGAGAAATGGAAGTTTTTGGTGGAAAGTTGCGGTTTTGAGTCAGTACCCCTCAGCCATTACGCGAGCATAGATGAGGCATGGAAGGAGGTAACCAATCGCTTCCCTCCTCTCTCGAAAACCCAAGGGGCCAGTGCAGTCCATGACAAGGTGGCCAATGGGTTGATATTTTTGTTTCTTTTTTGTTGA 1842 0.5239 MAYMCTDSGNLMAIAQQVIKQKQQQEQQQQQQQQQLGGVNSFCLNPWTTTPHTMSTAPALGYGLAGAGFSDPFQVAGTADAGEGGFQFAHLEHHSTGFRFSDFSGGGGGEFDSDEWMDSLMGGGDSTESSNLPSGCDAWQNDADLTLYGADPFTSCPSRLSIASSPTSDLNRVIFSDAQKCTNPPLQPQVPSWSPSPSPTPTPPPPPPPPPAVVKDTKPANPPPAHLQKNDVAGVSSGSPEAESAPPILKALLDCARLADSEPDRAVKSLIRLRESVSEHGDPTERVAFYFSEALYSRVSHQAEKRPTLFETSSEEFTLSYKALNDACPYSKFAHLTANQAILEATERARKIHIVDFGIVQGVQWAALLQALATRSAGKPARIRISGIPAPALGKSPASSLFATGNRLRDFARLLDLNFEFEPILTPIQELNESTFRVDPDEVLAVNFMLQLYNLLDETPVSVNAALRLAKSLNPKIMTLGEYEACLNEVDFINRFKNALRYYRAIFDSLEPNLARDSSDRLQVERLLLGRRIAGVIGPEEPGTRRERMEDKEKWKFLVESCGFESVPLSHYASIDEAWKEVTNRFPPLSKTQGASAVHDKVANGLIFLFLFC* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1124 613 ProSiteProfiles GRAS family profile. 239 613 IPR005202 -
Vvi4g1124 613 MobiDBLite consensus disorder prediction 188 218 - -
Vvi4g1124 613 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 248 578 IPR005202 -
Vvi4g1124 613 Coils Coil 12 35 - -
Vvi4g1124 613 MobiDBLite consensus disorder prediction 180 244 - -
Vvi4g1124 613 Pfam GRAS domain family 250 574 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1124 Vvi-Chr4 18196920 18199820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1124 1 573 GRAS Transcription Factor Family AT5G66770 58.692 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi4g1124 GRAS 1.7e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1124 - - vvi:100246179 1014.99