Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1120 ATGGTACCTGGTAACGAAGTAAAGGATGACGCCTCTGCGGATTCTCCGACTTCAGTCCTGGAGGATGAGGGTATTTGTGAGGAGAAAATTAAAGTTAAGATGGAGGATGACATACTTCATCCCCTCGATGCAAAAAATGGAGATTCTTCTCTTATATCCGGAACCATGGCAAAGGAAGAAGAGATGCTGATGAAAGAACGGGTGAAGGAAGAGGATGCAGAACAAGTAGTGACTCAGGAGGCCCCCCACTTGAATGACAGCCAGTTCACTAAATTGGATGAGCTTCTAACACAGACCCAGCTGTACTCAGAGTTTTTGCTGGAAAAAATGGATTCCATCACATTTAATCGTGTGGAGGAGAAAGAGAGTGAAATTGTTGAAGTAAAAAAGAGGGGTCGTGGTTCAAAAAGAAAAGCGGAATATAACAATAGGAAGGCCAAGAGAGCAGTTGCAGCCATGCTTACAAGATCTAAAGAAGGAGCTACTCCTGAAGATGTGAACCTCACCGAGGAGGAGAGAGCTGAGAAAGAGCAGGCTGGACTTGTACCCTTGTTGACAGGTGGAAAATTGAAGTCTTATCAGATCAAAGGTGTGAAGTGGCTGATCTCACTATGGCAAAATGGACTGAATGGGATCCTTGCAGATCAAATGGGGCTTGGAAAGACAATTCAAACTATTGGCTTCCTTGCACATTTAAAAGGAAAGGGGTTAGATGGCCCCTATTTGGTCATTGCTCCTCTTTCTACTCTCTCAAACTGGGCAAATGAAATAAAAAGGTTTGTGCCCTCAATAAATGCAATCATCTACCATGGCAATAGGAAAGAAAGAGATCAAATACGAATGAAGTATATGCCAAGAACAATTGGCCCCAAATTTCCTATAATTCTGACTTCTTATGAGGTTGCATTAAATGATGCTAGAAAGTATCTAAGGCATTACAATTGGAAATATCTTGTGGTTGATGAGGGGCACAGATTGAAGAACAGTAAATGCAAATTACTGAAGGAACTGAAGTTGTTACCCGTAGAAAATAAGCTTCTGCTCACTGGGACTCCTCTGCAGAACAACCTGGCAGAGCTTTGGTCTTTGTTAAACTTCATATTGCCTGATATTTTCTCATCCCATGAAGAATTTGAGTCCTGGTTTGATCTGTCAGGCAAGTGCAATAATGAAGCAGTGGTGGAAGAATTGGAAGAGAGGAAAAGGGCTCAAGTGGTGTCAAAACTTCATGCTATATTGCGTCCCTTTCTCCTTCGGAGAATGAAGTCAGATGTTGAGCAGATGCTTCCCAGAAAAAAAGAGATTATTTTGTATGCCACCATGACTGAGCATCAAAAGAATTTCAAGGATCATTTGGTTAATAAGACATTGGAGAATTATTTAAAAGAGAAAGCAAGCACTGGGCGTGGTGTGAAAGGAAAGCTTAACAATTTAATGGTCCAACTTCGGAAGAACTGTAACCATCCTGACCTCTTAGAGTCTGCCTTTGATGGTTCATATCTCTATCCTCCTGTAGAACAGATAGTTGAACAGTGTGGCAAATTCCGCTTGCTGGACAGATTGTTGGCAAGGTTATTTGCCCGCAAGCATAAAGTTCTGATCTTCTCTCAGTGGACTAAGATTTTGGATATAATGGAATACTATTTTAGCGAGAAAGGACTTGAAGTTTGTAGAATTGATGGTAGTGTGAGGCTGGATGAAAGAAAAAGACAGATTGAGGAGTTCAATGATATGAACAGCAATTGTAGAGTATTTCTTCTCAGCACTCGAGCTGGTGGGCTAGGTATCAATCTCACTGCAGCTGATACTTGTATATTGTATGACAGTGACTGGAACCCTCAAATGGATCTGCAGGCCATGGATAGATGTCATAGGATAGGTCAAACCAAGCCTGTTCATGTTTACCGGCTTGCAACTGCCCAATCTATAGAGGGCCGCATGCTGAAAAGAGCTTTCAGTAAGTTGAAACTTGAACATGTTGTGATTGGGAAAGGCCAGTTCCAGCAAGAACGAATCAAACCTAATATGGATGTTTTGGAGGAAGAGGATCTGCTACAACTGCTTCAAGATCAAGAAGATTCTGAAGATAAGTTGATACAGACAGACATCAGTGAAGAAGATCTGGACCGGATCTTGGATCGCAGTGACTTGATTGGTGATACCTCCAATGATGATGGGAGGTCTAACTCTGCCGCGGATGCCTTTCCCCTGAAGGGCCCTGGTTGGGAAGTGATGACACCAACCGCAAGTGGAGGCATGCTCTCTACCCTTAATAGCTAA 2280 0.4246 MVPGNEVKDDASADSPTSVLEDEGICEEKIKVKMEDDILHPLDAKNGDSSLISGTMAKEEEMLMKERVKEEDAEQVVTQEAPHLNDSQFTKLDELLTQTQLYSEFLLEKMDSITFNRVEEKESEIVEVKKRGRGSKRKAEYNNRKAKRAVAAMLTRSKEGATPEDVNLTEEERAEKEQAGLVPLLTGGKLKSYQIKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWANEIKRFVPSINAIIYHGNRKERDQIRMKYMPRTIGPKFPIILTSYEVALNDARKYLRHYNWKYLVVDEGHRLKNSKCKLLKELKLLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHEEFESWFDLSGKCNNEAVVEELEERKRAQVVSKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQKNFKDHLVNKTLENYLKEKASTGRGVKGKLNNLMVQLRKNCNHPDLLESAFDGSYLYPPVEQIVEQCGKFRLLDRLLARLFARKHKVLIFSQWTKILDIMEYYFSEKGLEVCRIDGSVRLDERKRQIEEFNDMNSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRMLKRAFSKLKLEHVVIGKGQFQQERIKPNMDVLEEEDLLQLLQDQEDSEDKLIQTDISEEDLDRILDRSDLIGDTSNDDGRSNSAADAFPLKGPGWEVMTPTASGGMLSTLNS* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1120 759 MobiDBLite consensus disorder prediction 1 22 - -
Vvi4g1120 759 Pfam Helicase conserved C-terminal domain 516 627 IPR001650 -
Vvi4g1120 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 718 IPR027417 -
Vvi4g1120 759 Pfam SNF2-related domain 193 491 IPR000330 GO:0005524|GO:0140658
Vvi4g1120 759 Gene3D - 191 421 IPR038718 -
Vvi4g1120 759 FunFam ATP-dependent DNA helicase DDM1 184 429 - -
Vvi4g1120 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 420 IPR027417 -
Vvi4g1120 759 CDD SF2_C_SNF 503 637 - -
Vvi4g1120 759 PANTHER SNF2/RAD54 HELICASE FAMILY 60 715 - -
Vvi4g1120 759 FunFam Chromatin complex subunit A 106 430 658 - -
Vvi4g1120 759 SMART helicmild6 543 627 IPR001650 -
Vvi4g1120 759 SMART ultradead3 186 381 IPR014001 -
Vvi4g1120 759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 370 IPR014001 -
Vvi4g1120 759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 517 680 IPR001650 -
Vvi4g1120 759 Gene3D - 426 725 IPR027417 -
Vvi4g1120 759 MobiDBLite consensus disorder prediction 719 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1120 Vvi-Chr4 18137893 18145402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1120 206 669 RAD5 or RAD16-like Gene Family AT3G16600 24.339 2.40e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi4g1120 SNF2_N 2e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1120 K19001 - vvi:100263333 1439.09