LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g1117	ATGGGGGACTACAACGATGCGTTAATGCGCAACAACAACGCCGCCGTACAGGCGCGCACGAAGGCTCAGAATCGTGCCAATGTTCTGCAACTTAAATTGATCGGGCAGAGTCATCCCACCGGTCTAACAGCCAATCTTTTGAAACTCTTTGAGCCTCGTCCTCCATTGGAGTTTAAACCACCTCCAGAGAAAAGAAAATGCCCACCATATACAGGAATGGCACAATTCGCAAGTAACTTTGCTGAACCAGGAGAGCCAGAATATTCTCCACCAGTTCAAAAGGCTGAAACTCCTGCACAACGAAGAGCTAGAATCCACAAGTTACGACTAGAGAAGGGAGCAGAAAAAGCTACTGAGGAGTTTCAGAAATATGATCCAAATAATGACCCAAATATTTCGGGAGACCCATACAAGACATTGTTTGTAGCTAGGCTTAACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGGCCAATCAAGCGGGTCCGACTCATTACCGACAAAGAGACTAGTAAACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAGCTGCTTATAAACAAGCTGATGGAAGGAAGCTTGATAACAGAAGGGTGCTGGTTGACGTTGAACGTGGTAGAACTGTTCCTAATTGGCGTCCCCGCAGACTGGGTGGTGGACTTGGAACAACTAGGGTTGGAGGTGAAGAAGTGAATCCAAAGTATTCTGGAAGAGAGCAGCAGCCAGTAGGAGGACCACCTCGGTCTGAGGAGCCTAGGACAAGAGAGGATCGGCATGGAGACCGGGACAGGGAAAAATCCCGTGAAAGGGGAAGGGATAGAGAGAGGGAACGGGAAAAGTCTCGTGAACCCGACAGGGCCAGAGATCGGGATCATAGAGAGGATAGGCACCATAGAGATCGTGACAGAAACCGGGATAAGGACAGGGACAGAGATAGGGGTCGTGACAGGGACCGCACCCGTGATCGTGATCGGGGTCGGGACCGTGGTCGTGATTATGAGCGAGAGCGTGACCGAGATCGTGATCGTCCTAGGGAGAGAGAAAAGGAGAAGGAGAAAGATAGAGATAAGGACTATGATGCCGGGGAACCTAACTATGACCGTGGGCGTTCTCGTGATAAAGAATATTATGATCACATGGAATCAAAGCATGAGCGAGAACGACATGGTGAAAGGGACCGGGACTTAGAACATGCTGGGCCTGAGGATGATCATGGGTGGTATGAGCAGCCTGAGCATGGGCATAGGCGTCCAGAAGCTGAACATGATGATGAGCATTACAAGCACTATGATCATCAAGCTCGAGGACAGTATGATCATCTGGATGCCCAGGGTGATCACGACCTTTATGATCGTCATGCTGACAATGATCGTGATCGTTACAACCAAATGGATGAGGATAATTACCATTATGATCATGCAGCATATGACTCTCGTGAAAGGGATAGGACTCGGGATCTGGAGCGTGAATATCGGCGCTCAGAGAGGTCACTCTCCCGAGATTTCGAACACTGA	1545	0.4867	MGDYNDALMRNNNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKPPPEKRKCPPYTGMAQFASNFAEPGEPEYSPPVQKAETPAQRRARIHKLRLEKGAEKATEEFQKYDPNNDPNISGDPYKTLFVARLNYETTESRIKREFEAYGPIKRVRLITDKETSKPRGYAFIEYMHTRDMKAAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNPKYSGREQQPVGGPPRSEEPRTREDRHGDRDREKSRERGRDREREREKSREPDRARDRDHREDRHHRDRDRNRDKDRDRDRGRDRDRTRDRDRGRDRGRDYERERDRDRDRPREREKEKEKDRDKDYDAGEPNYDRGRSRDKEYYDHMESKHERERHGERDRDLEHAGPEDDHGWYEQPEHGHRRPEAEHDDEHYKHYDHQARGQYDHLDAQGDHDLYDRHADNDRDRYNQMDEDNYHYDHAAYDSRERDRTRDLEREYRRSERSLSRDFEH*	515

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g1117	514	FunFam	U1 small nuclear ribonucleoprotein 70 kDa	125	250	-	-
	Vvi4g1117	514	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	140	209	IPR000504	GO:0003723
	Vvi4g1117	514	CDD	RRM_snRNP70	137	227	IPR034143	GO:0030619
	Vvi4g1117	514	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	138	216	IPR000504	GO:0003723
	Vvi4g1117	514	Pfam	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal	41	129	IPR022023	-
	Vvi4g1117	514	SUPERFAMILY	RNA-binding domain, RBD	126	238	IPR035979	GO:0003676
	Vvi4g1117	514	PANTHER	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	59	322	-	-
	Vvi4g1117	514	MobiDBLite	consensus disorder prediction	110	132	-	-
	Vvi4g1117	514	Gene3D	-	125	250	IPR012677	-
	Vvi4g1117	514	MobiDBLite	consensus disorder prediction	259	514	-	-
	Vvi4g1117	514	SMART	rrm1_1	139	212	IPR000504	GO:0003723
	Vvi4g1117	514	MobiDBLite	consensus disorder prediction	220	514	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g1117	140	213	C2H2 Transcription Factor Family	AT2G19380	28.378	1.38e-06	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g1117	K11093		-	vvi:100244445	530.02