Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1116 ATGCGCCAAGAGGAGGAAGAAAAGAAACCAACAGGCGAGTCAGGCGACGCAATATCAATCGAATCCATCGGTTCACAGCAATCCAACTGGTACAACTCTCCCCAGTCAGCAGACCATGTTGTTAAACTTCACCAACCACCAGGTGGTGGCTGGGCACCTCCACCTCCGCCAATGATCAGCAGTGGCGACATGAGCTCGAATTACTCAGGCCCTCGTCATCCCCCATTGCCACCCCCATCACCAAATCTTGCTCTTGGGTTCAACAAGAGCACCTTCACTTATGAGGAGCTAGCTGCTGCTACAGGCGGGTTTGCTCAGGCTAATCTGCTGGGTCAAGGAGGGTTCGGGTATGTGCACAAGGGCGTGTTGCCCAATGGAAAGGAGATTGCAGTTAAGAGTCTAAAATCAGGTAGTGGACAAGGAGAACGGGAATTCCAGGCTGAGGTTGAAATTATAAGCCGTGTCCATCATCGCCATCTTGTGTCACTTGTGGGATATTGCATTGCTGATGGGCAGCGGATGTTGGTTTATGAATTTGTTCACAACAAAACATTGGAACACCACCTTCATGGTAATGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACTGCCATCCAAAGATTATCCATCGTGACATTAAAACTGCTAACATTCTCCTGGACTACAACTTTGAAGCCATGGTGGCTGATTTTGGTTTGGCTAAGCTGTCTACTGACAATTGCACCCATGTCTCTACACGCGTCATGGGAACATTTGGGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGACCTGTTGATAACGCTATATTTGAAGAAAGCTTAGTAGACTGGGCTCGACCACTTCTATCGCGTGCATTGGCGGATGGCAACTATGACGAGCTGGTGGATCGATTCTTGGAGAACAATTACAACACTCAGGAGATGGCACGCATGGTGGCTTGTGCTGCTGCCAGCATCCGGCATTCTGCTAAAAGACGGCCAAAAATGAGCCAGATTGTACGGGCATTGGAGGGAGATGTATCACTGGAGGACCTAAACGATGTGACAAAGACCAACCAGAGCCCCGCGTATAGCACAAGTATGAGCTCAGAATACAACACAAGAATGTACAACGCTGATATGGAGAAGTTCAAAAAGATGGCATTGTCGAGCCAAGAGTTTGGAAGCAGCGAGGATGGAACTAGTGAGTATGGGCAGAACCCATCCTCTTCCGACAACTCCCAAGAGATGATCCATCGTTAA 1359 0.4857 MRQEEEEKKPTGESGDAISIESIGSQQSNWYNSPQSADHVVKLHQPPGGGWAPPPPPMISSGDMSSNYSGPRHPPLPPPSPNLALGFNKSTFTYEELAAATGGFAQANLLGQGGFGYVHKGVLPNGKEIAVKSLKSGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIADGQRMLVYEFVHNKTLEHHLHGNGRPIMDWASRMRIALGSAKGLAYLHEDCHPKIIHRDIKTANILLDYNFEAMVADFGLAKLSTDNCTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDNAIFEESLVDWARPLLSRALADGNYDELVDRFLENNYNTQEMARMVACAAASIRHSAKRRPKMSQIVRALEGDVSLEDLNDVTKTNQSPAYSTSMSSEYNTRMYNADMEKFKKMALSSQEFGSSEDGTSEYGQNPSSSDNSQEMIHR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1116 452 Gene3D Transferase(Phosphotransferase) domain 1 180 399 - -
Vvi4g1116 452 MobiDBLite consensus disorder prediction 18 39 - -
Vvi4g1116 452 MobiDBLite consensus disorder prediction 420 452 - -
Vvi4g1116 452 ProSitePatterns Protein kinases ATP-binding region signature. 110 132 IPR017441 GO:0005524
Vvi4g1116 452 SUPERFAMILY Protein kinase-like (PK-like) 78 375 IPR011009 -
Vvi4g1116 452 MobiDBLite consensus disorder prediction 1 81 - -
Vvi4g1116 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vvi4g1116 452 ProSiteProfiles Protein kinase domain profile. 104 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1116 452 FunFam proline-rich receptor-like protein kinase PERK1 82 179 - -
Vvi4g1116 452 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 63 423 IPR047117 -
Vvi4g1116 452 CDD STKc_IRAK 110 377 - -
Vvi4g1116 452 Gene3D Phosphorylase Kinase; domain 1 82 179 - -
Vvi4g1116 452 SMART serkin_6 104 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1116 452 MobiDBLite consensus disorder prediction 422 452 - -
Vvi4g1116 452 FunFam Proline-rich receptor-like protein kinase PERK1 180 386 - -
Vvi4g1116 452 Pfam Protein tyrosine and serine/threonine kinase 108 374 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1116 Vvi-Chr4 18102394 18105221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1116 85 421 Trihelix Transcription Factor Family AT1G70460 64.307 5.73e-156 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vvi4g1116 PK_Tyr_Ser-Thr 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1116 - - vvi:100265084 819.69