Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1108 ATGGCGAGACGTTTCAAGCTTCGGATTTCGCGAGTCATCCCATCTTTCCAATCCTGTCGCTCCAAGGATCCGTCCAGTCTTCCTGAAAATCCTGTTCCTGTGTCCTCCAGGCAATGCTTCTCCGATGACGATGACAGCGAATCGCCGGAGTTCAAGTGGAAGAAGGAAGACAAGTGGCACGTGGTTGCCAAGGTCTACGACGACAACCCTCGCCAGAAAATATATAACTCATCTGTTTCCGGGGAGTCGGACGATGATGTGTTGCCTCCACCGCCACCTCCCACGGCGGAGAAGAAGAAACGGAGGAGTAAAAAGAAGAAAGCAGCGTTTAGAGTTCGCATGAGTACTTCTTCAGCTGACATTTCTTCTTCAAGAAGCTTCTCCACTGATTCATCGTCGGAGTTCAATCCTCATTTGGAGACAATACGCGAGATGCCCATGAATGGAGTGAGGCGTAAGAAAAAGAAGAACGCGAAGAAGGTTAAGAAGACAAGTGGGCTGTCGTCTCCAGAAAGTGAGTCGCCGGCGAGGTTGTCAATGTTCCAGAGGCTGATACCCTGTACTGTGGACGGAAAGGTTAGGGAGAGTTTTGCAGTGGTGAAGAAATCGGAGGACCCCTACGAAGATTTCAAGAGGTCAATGATGGAGATGATACTGGAGAAACAGATGTTCGAAGAGAAGGACTTGGAGCAGCTCCTCCACTGTTTTCTGTCCCTGAACTCGCGCCACCACCATGGAGTCATCGTCGAGGCTTTCACAGAGATTTGGGATGTTCTGTTCTGTAAACCCCCGACCCACAAACGGGCGATTTGGCTTCATTTGACAGGGAAAGGCATGTGGGCAATGTGGCTTGGGATCAAAGATCATGTGAATCACCAACTTTTGCCGAAAGGGTGA 897 0.4994 MARRFKLRISRVIPSFQSCRSKDPSSLPENPVPVSSRQCFSDDDDSESPEFKWKKEDKWHVVAKVYDDNPRQKIYNSSVSGESDDDVLPPPPPPTAEKKKRRSKKKKAAFRVRMSTSSADISSSRSFSTDSSSEFNPHLETIREMPMNGVRRKKKKNAKKVKKTSGLSSPESESPARLSMFQRLIPCTVDGKVRESFAVVKKSEDPYEDFKRSMMEMILEKQMFEEKDLEQLLHCFLSLNSRHHHGVIVEAFTEIWDVLFCKPPTHKRAIWLHLTGKGMWAMWLGIKDHVNHQLLPKG* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1108 298 MobiDBLite consensus disorder prediction 18 51 - -
Vvi4g1108 298 MobiDBLite consensus disorder prediction 147 175 - -
Vvi4g1108 298 ProSiteProfiles OVATE domain profile. 199 258 IPR006458 -
Vvi4g1108 298 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 68 260 IPR038933 GO:0045892
Vvi4g1108 298 Pfam Transcriptional repressor, ovate 203 259 IPR006458 -
Vvi4g1108 298 MobiDBLite consensus disorder prediction 115 134 - -
Vvi4g1108 298 MobiDBLite consensus disorder prediction 70 134 - -
Vvi4g1108 298 NCBIfam uncharacterized plant-specific domain TIGR01568 197 259 IPR006458 -
Vvi4g1108 298 MobiDBLite consensus disorder prediction 18 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1108 Vvi-Chr4 18030230 18035626 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vvi4g1108 Ovate 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1108 - - vvi:100263246 425.246