Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1106 ATGACGACTCGAATCGCTCCGGGCGTCGGAGCCAACTTGCTAGGCCAACACTCCGCCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAGGTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTGTTAATGTATATGTTCCCAAAGATAGAGTGACAAATCTGCACCAAGGATATGGATTTGTAGAATTTCGAAGTGAAGAGGATGCTGATTATGCAATTAAGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGAAACCTTGATCCTGATGTGGATGAGAAACTTCTGTATGATACTTTCAGTGCATTTGGAGTCATTGTCACAAATCCCAAGATAATGAGAGATCCTGATACAGGAAATTCTCGTGGTTTTGGTTTCGTTAGCTATGACTCTTTTGAGGCATCTGATGCAGCTATTGAGGCAATGAATGGTCAGTATCTCTGCAACCGGCAGATAACTGTGTCCTATGCATACAAGAAAGACACTAAAGGGGAGCGGCATGGTACCCCAGCAGAAAGGGTTTTGGCTGCAAGCAATCCAAGTGCTCCAAAGAGCAGGCCCCACACCTTGTTTGCGAGTGGACCTCCTACACTTCCCAATGTTCCTCAGGCCAATGGTAACATGGGTGCTCCAATGCCGCCACGTCCCTTTGCAAATGGTGTTGTTCCTCCGGTCCCAATTCCCGCAATGCGCCCCCCACCCCCACAAAGTGGAGCCTTCCCACCCATGCAGCTAGCTGGACCACCATCTTGGCAAGGGCAGCCTCAGCAACCGGGTCAACCAATGCAACCACCTATGATGCCTCCGCCCCCACTTCAGCAGTTCAGGCCGCCTCCCCCGAGCATGCCACCACCCCCTCAACAGGTAATGCAAGCTCTCTCAAGACCTCCTCCACCACCAGCATTAATGGGGGGCCCTCCCCCTGTTTGGCGGCCACCCCCACCCCCTCAGCAACTGGCTGGGAGGCCCCCTACTATGCTTCAGATGTCAATGCCGCCACCTCCACCACCTCCTGCAGCAGGTTGA 1122 0.5152 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRPHTLFASGPPTLPNVPQANGNMGAPMPPRPFANGVVPPVPIPAMRPPPPQSGAFPPMQLAGPPSWQGQPQQPGQPMQPPMMPPPPLQQFRPPPPSMPPPPQQVMQALSRPPPPPALMGGPPPVWRPPPPPQQLAGRPPTMLQMSMPPPPPPPAAG* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1106 373 CDD RRM1_SF3B4 28 100 IPR034158 -
Vvi4g1106 373 MobiDBLite consensus disorder prediction 194 373 - -
Vvi4g1106 373 CDD RRM2_SF3B4 111 193 IPR034159 -
Vvi4g1106 373 Gene3D - 107 204 IPR012677 -
Vvi4g1106 373 FunFam Splicing factor 3b subunit 4 16 108 - -
Vvi4g1106 373 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 366 - -
Vvi4g1106 373 PRINTS Proline rich extensin signature 269 290 - -
Vvi4g1106 373 PRINTS Proline rich extensin signature 212 228 - -
Vvi4g1106 373 PRINTS Proline rich extensin signature 308 325 - -
Vvi4g1106 373 PRINTS Proline rich extensin signature 328 353 - -
Vvi4g1106 373 PRINTS Proline rich extensin signature 253 265 - -
Vvi4g1106 373 PRINTS Proline rich extensin signature 290 306 - -
Vvi4g1106 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Vvi4g1106 373 Gene3D - 16 106 IPR012677 -
Vvi4g1106 373 MobiDBLite consensus disorder prediction 248 274 - -
Vvi4g1106 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Vvi4g1106 373 FunFam splicing factor 3B subunit 4 109 200 - -
Vvi4g1106 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Vvi4g1106 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Vvi4g1106 373 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Vvi4g1106 373 MobiDBLite consensus disorder prediction 286 373 - -
Vvi4g1106 373 SMART rrm1_1 26 99 IPR000504 GO:0003723
Vvi4g1106 373 SMART rrm1_1 113 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1106 Vvi-Chr4 18012658 18021714 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1106 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 30.808 2.11e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1106 K12831 - vvi:100251324 602.053