Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1104 ATGCCGGACTACGAAGGCAGATACGAAGGTAACGGTAATGGAGAGGATCTCGACAATTATGGTTCCTCTCCTCAACCACGGGGTAGTAGCCATGGCGGTCCCGATGACTATAGCGATTCTAAATCTCAGCATGGTTCTCGTGAGTATCAAAGGGAGTCTTCCAAAAGCAGGGAAAGGGAAAGAGAGAAAGGGCGTGACAAGGATCGTGAGAGAGACAGGGATAGGGAAAGGGACAAGGAGAGGGACAGGGACAGGGACAGGGACAAGGAGAGGGACAGGGACAGAAGAGACCGCTATAGGGATCGGAGTGACAGAAGGGAACGAACCAGAGATAGAGATGATGATGATTTCCACCGCAGCCGAGATTATGATAGGCGAAGGGATTTTGACAGGGATAGAGATGACAGGCATAAGCGCAGGTCTCGTTCTCGTTCCAAGGGTAGATCCGAACAGAGATCAAGGTCAAGATCTGCCTCGCTGTCAAAGAGCAAAAGGGTCAGTGGTTTTGACATGGCGCCCCCTGCTTCTGCAATGTTAGCCGGTGCTGCTGCTGCTGCAGGTCAGATTCCCGGTACCACTCCAACCATTCCTGGAATGTTCCCGAACATGTTTCCATTAGCCTCTGGACAGTTTGGAGCTCTTCCTGTTATGCCAGTTCAGGCTATGACTCAGCAGGCTACTAGACATGCTCGGCGGGTATATGTTGGTGGACTTTCTCCCACAGCCAATGAACAGTCTGTTGCAACCTTTTTCAGCCAGGTTATGTCTGCAATTGGAGGAAACACTGCTGGACCAGGGGATGCTGTGGTTAATGTTTATATAAATCATGAAAAGAAGTTTGCCTTTGTGGAGATGAGATCTGTTGAGGAAGCCAGTAATGCAATGGCTTTGGATGGTATCATTTTTGAGGGTGCTCCAGTCAAGGTGAGGAGACCTAGTGATTATAACCCTTCTCTTGCTGCAACACTTGGTCCAAGTCAGCCCAATCCCAATTTAAACCTTGCTGCTGTGGGCCTAACACCAGGTTCTGCTGGGGGTCTTGAGGGTCCTGACCGCATTTTTGTTGGTGGGCTCCCCTACTACTTCACAGAAGCACAGATCAGGGAGTTGCTAGAGTCTTTTGGTCCTCTTCGGGGTTTTGATCTTGTGAAAGACAGGGAAACTGGAAACTCCAAGGGCTATGCATTTTGTGTTTACCAAGATCTTTCTGTTACTGACATAGCTTGTGCTGCATTGAATGGAATTAAAATGGGTGATAAGACTCTCACTGTTAGGCGTGCAAACCAGGGTGCTTCCCAACCTAAACCCGAGCAAGAGAATGTATTGTTGCATGCACAGCAGCAGATTGCTTTACAGAGGCTAATGTTCCAGCCTGGGGCACTTGCCACCAAAGTTGTATGCTTAACTCAAGTGGTTAATGCGGATGAGCTACAAGATGATGAGGCTTACGAAGACATTGTTGAAGACATGCGCATAGAGGGAGGAAAATTTGGTAATTTAGTGAATGTTGCCATACCTCGCCCAAAACCAAATGGTGAACCAACACCTGGGTTAGGAAAGGTTTTCTTGGAGTATGCCGACATTGATGGTGCTACAAAAGCCCGGACTGGATTGAATGGAAGAAAATTTGATGGAAACCAAGTTGTGGCCGTCTTCTATCCAGAGAACAAGTTTTCCCAAGGGGAATATGATGGCTAG 1698 0.4817 MPDYEGRYEGNGNGEDLDNYGSSPQPRGSSHGGPDDYSDSKSQHGSREYQRESSKSREREREKGRDKDRERDRDRERDKERDRDRDRDKERDRDRRDRYRDRSDRRERTRDRDDDDFHRSRDYDRRRDFDRDRDDRHKRRSRSRSKGRSEQRSRSRSASLSKSKRVSGFDMAPPASAMLAGAAAAAGQIPGTTPTIPGMFPNMFPLASGQFGALPVMPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGASQPKPEQENVLLHAQQQIALQRLMFQPGALATKVVCLTQVVNADELQDDEAYEDIVEDMRIEGGKFGNLVNVAIPRPKPNGEPTPGLGKVFLEYADIDGATKARTGLNGRKFDGNQVVAVFYPENKFSQGEYDG* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1104 565 Gene3D - 342 443 IPR012677 -
Vvi4g1104 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 314 IPR000504 GO:0003723
Vvi4g1104 565 FunFam U2 snRNP auxiliary factor large subunit 226 327 - -
Vvi4g1104 565 Gene3D - 460 564 IPR012677 -
Vvi4g1104 565 PANTHER RNA-BINDING PROTEIN 35 563 - -
Vvi4g1104 565 MobiDBLite consensus disorder prediction 37 137 - -
Vvi4g1104 565 SUPERFAMILY RNA-binding domain, RBD 352 556 IPR035979 GO:0003676
Vvi4g1104 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 470 556 IPR000504 GO:0003723
Vvi4g1104 565 SMART rrm1_1 232 310 IPR000504 GO:0003723
Vvi4g1104 565 SMART rrm1_1 352 425 IPR000504 GO:0003723
Vvi4g1104 565 SMART rrm1_1 465 552 IPR000504 GO:0003723
Vvi4g1104 565 MobiDBLite consensus disorder prediction 1 169 - -
Vvi4g1104 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 422 IPR000504 GO:0003723
Vvi4g1104 565 FunFam U2 snRNP auxiliary factor large subunit 459 564 - -
Vvi4g1104 565 CDD RRM3_U2AF65 463 551 - -
Vvi4g1104 565 CDD RRM2_U2AF65 351 427 - -
Vvi4g1104 565 FunFam U2 snRNP auxiliary factor large subunit 328 441 - -
Vvi4g1104 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 429 IPR000504 GO:0003723
Vvi4g1104 565 Gene3D - 226 327 IPR012677 -
Vvi4g1104 565 SUPERFAMILY RNA-binding domain, RBD 231 316 IPR035979 GO:0003676
Vvi4g1104 565 CDD RRM1_U2AF65 230 312 - -
Vvi4g1104 565 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 51 563 IPR006529 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1104 Vvi-Chr4 18001311 18008512 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1104 353 541 Eukaryotic Initiation Factors Gene Family AT1G22760 26.316 2.33e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1104 K12837 - vvi:100241076 779.245