Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1100 ATGCCGGTAGATTTAGATAATTCGTCTGCGATGACCGTCTCTACAGCTTCCGGTGAGGCCAGCGTGTCTTCTACCGGCAATCAACCTGCGCCACCCAAGCCCGCACCCAAGAAAAAACGAAACCTCCCCGGAATGCCAGATCCGGACGCGGAGGTGATTGCTTTGTCTCCCAAGACTCTAATGGCGACAAATCGATTTGTTTGTGAAATCTGCAACAAAGGGTTCCAGCGAGACCAGAACTTGCAGCTTCATCGCCGGGGTCATAATCTTCCATGGAAGCTGCGGCAGAGGTCAAGTAAAGAGGTTCGGAAGCGAGTGTATGTTTGTCCAGAGCCATCTTGCGTTCATCACGAACCGTCGAGAGCTTTGGGCGATTTGACGGGGATAAAGAAGCATTTTTGCAGAAAACATGGGGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCAGTTCAATCTGATTGGAAAGCTCACTCGAAGATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAGGAGGGATAGCTTCATCACCCACAGGGCTTTCTGCGACGCGTTGGCGGAGGAGAGCGCCAAAACCCAGACTCAGACAGCGGTAGCCAATCCAAATTCAGATGAAGACCCAAAGATCGAGTCACCCCCGCCGCCGCCTCCCCCTCCTCCTCCCCCTGCACCAGCTGTTGCTCCGTCAACTGCTGTAATATCAGCAGTTTTGCCGATACAGAGTCCAGAGTTGCCGGAGAATCCAACTCAGATCTTGGAAGAAGCCCCACCAGCTGCCACCGGCCTAAATGCAAGCTGTAGTAGCAGTACTAGCTCGAGCAGTAATGGTACCACCAGCAGTAGTGCATTTGCCAGCTTGTTTGTTTCATCCACTGCATCGGCAAGCTTACAACAACCCCAAGCTACTGGATTCTCGGGCTTAAGCCGAGTCATGACTCGTCCTGATCGCCCAACTGAACTCACACCATCTTCTTCCACAGAGCCCATTTCTCTCTGCTTATCTACCAATCACGGATCGTCAATCTTTGGAACTGCTGGGCAAGAGCGCAGGCAATATGCGCCACCACCACAGCCTGCCATGTCTGCCACAGCCCTACTACAGAAGGCAGCTCAAATGGGTGCGGCTGCAACAAATGCCTCTCTGCTGCGTGGTTTTGGAATAGTTTCATCTACTTCTTCATCCGGGCAGCAAGAGAATCTACAGTGGAACCGCCAGCAAATGGAGCCAGAAAGCACGTCTGTGGCTGCAGGGCTGGGACTTGGGCTTCCCTGCGATGAAGGTTCCGGGCTGAAGGAACTAATGATGGGAACTCCTTCCTTGTTTGGTCCAAAGCAGACTACCTTAGATCTCTTGGGGTTGGGGATGGCAGCAAGTGGCAGCCCCTCTGGAGGGTTATCAGCTTTAATCACTTCCATTGGAGGAGGCCTTGATGTGGCTGCAGCAGCGGCCACATATAGAGGCGGGGAATTTGCAGGCAAAGACATGGGAAGGGGCTGA 1521 0.5253 MPVDLDNSSAMTVSTASGEASVSSTGNQPAPPKPAPKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPSCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKTQTQTAVANPNSDEDPKIESPPPPPPPPPPPAPAVAPSTAVISAVLPIQSPELPENPTQILEEAPPAATGLNASCSSSTSSSSNGTTSSSAFASLFVSSTASASLQQPQATGFSGLSRVMTRPDRPTELTPSSSTEPISLCLSTNHGSSIFGTAGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSTSSSGQQENLQWNRQQMEPESTSVAAGLGLGLPCDEGSGLKELMMGTPSLFGPKQTTLDLLGLGMAASGSPSGGLSALITSIGGGLDVAAAAATYRGGEFAGKDMGRG* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1100 506 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vvi4g1100 506 SMART c2h2final6 107 137 IPR013087 -
Vvi4g1100 506 SMART c2h2final6 142 162 IPR013087 -
Vvi4g1100 506 SMART c2h2final6 66 88 IPR013087 -
Vvi4g1100 506 MobiDBLite consensus disorder prediction 313 338 - -
Vvi4g1100 506 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Vvi4g1100 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 462 IPR031140 -
Vvi4g1100 506 MobiDBLite consensus disorder prediction 269 288 - -
Vvi4g1100 506 MobiDBLite consensus disorder prediction 215 235 - -
Vvi4g1100 506 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Vvi4g1100 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vvi4g1100 506 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Vvi4g1100 506 MobiDBLite consensus disorder prediction 7 28 - -
Vvi4g1100 506 MobiDBLite consensus disorder prediction 199 235 - -
Vvi4g1100 506 MobiDBLite consensus disorder prediction 267 288 - -
Vvi4g1100 506 Gene3D Classic Zinc Finger 118 201 - -
Vvi4g1100 506 MobiDBLite consensus disorder prediction 1 50 - -
Vvi4g1100 506 Gene3D Classic Zinc Finger 46 113 - -
Vvi4g1100 506 FunFam protein indeterminate-domain 12-like 45 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1100 Vvi-Chr4 17934082 17936204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1100 1 505 IDZ Gene Family AT5G66730 61.121 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi4g1100 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1100 K25869 - vvi:100263342 908.286