Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1095 ATGAAAGTCCCAGTTCCAGCCCAAAACAACCATTCTCCAAACCCTAAACCGCTTTCTTGTAACAATACCACCCGGAATACCGCTTTTCGGAGCCCTGCTACTGATACTATCAACGTGTGCTACGAGCCTACCTCTGTTCTCGACCTTCGCCGCAGCCCTAGCCCTGTGGCGGATAAGGCGGCCACGTTTCCAGGAATTACTGCCGTCTCCGACGTGTCGTTGCCACTGTCGGAGGAGCCTGGTTTTCAGTGGGAAGACCATGGGATGCATAATTTGGATGATTGGGATCCTACCGTGTGGGATTTCGTATTGCGTGATGACTCTGCCCCTGTCTTCGGGAGTGTTCCTCAGTTGGGTCCCTGCGACCCTCAATTCCCACACCTCCCTCTCCCTGACCTCCCACCTTCCCAACCCATCTATCATACTCAGCTTCTTCCTTTCGATTTTACTCTCTCTGAAATTTCTTCCAATCAAAACCACAACTTCAATCTCAACTCTTTCCACTGGAACGTTGGCTCCGAGTTTGTGGAGGAGCTTATTCGAGCAGCCGAGTGCTTTGGATCCAACAACTCACAGCTCGCTCAGGCGATATTGGCGCGGCTCAATCAACGGTTGCGAGCTCCGGTGGGAAAACCACTCCAGAGAGCTGCCTTCTACTTCAAAGAAGCTCTCCACTCTCTCCTAACGGGCTCCAACCGGAAGTCTCATTCGTCGGCATCGGAGATTGTTCAGACAATAAAAGCGTACAAGGCCTTCTCCATGATCTCTCCTATCGCTATGTTCTCCAACTTCACCGCCAGCCAAGCACTCCTCGAAGCTGTCGATGGATCACTCTTCATTCATATCATAGATTTCGACATCGGACTCGGAGGTCAGTATGCCTCTTTCATGAAAGAGATTGCGGACAGGTCAGAGGCTTGCAAAGTCAATCCTCCTGTTCTTCGAATCACCGCTGTCGTGCCCGAAGAGTACGCAGTTGAGAGCAGATTGATCAAAGAGAATTTGTTTCAGTTCGCTCAAGAGCTCAAAATAGAATTCCGTATTGAGTTCGTGTTGATTCCTACTTTCGAGGTTCTATCATTCAAAGCGGTCAAGTTCATCGACGGAGAAAAGACTGCTGTTAACATATCGCCGGCGATATTCCGACGTCTCGGTACCACCAATAATATCGCCGGATTTTTCTGCGATCTCCGGCGGATTTCCCCACAAGTTGTCGTGTTTGTAGACGGCGAAGGGTGGACCGATAGCGGAGCGACGTCGTTTAACCGGAATTTCATCAACGGCCTTGAATTCTACACAGCGATGCTGGAATCATTGGACGCTGGTGGCGCTGGCGCCGGCGGTGATTGGGTTCGTAAGATTGAGATGTCCCTGATTCAGCCGAAGATATTTGCGGCTGTGGGAGATGTGGGACGGCGGGTGACGGCGTGGAGGGAGCTGTTTTCCGGCGCGGGGTTGGGGCAGGTGCAGTGGAGCCAGTTCGCGGAGTCTCAAGCAGAGTGCCTACTAGGGAAGTCACAGGTAAGGGGCTTCCACGTGGCAAAGCGGCAGGCTGAGATGTTGCTTTGCTGGCACGGGAAACCATTGGTGGCCACGTCAGCATGGAGGTGGTTGTGA 1617 0.5226 MKVPVPAQNNHSPNPKPLSCNNTTRNTAFRSPATDTINVCYEPTSVLDLRRSPSPVADKAATFPGITAVSDVSLPLSEEPGFQWEDHGMHNLDDWDPTVWDFVLRDDSAPVFGSVPQLGPCDPQFPHLPLPDLPPSQPIYHTQLLPFDFTLSEISSNQNHNFNLNSFHWNVGSEFVEELIRAAECFGSNNSQLAQAILARLNQRLRAPVGKPLQRAAFYFKEALHSLLTGSNRKSHSSASEIVQTIKAYKAFSMISPIAMFSNFTASQALLEAVDGSLFIHIIDFDIGLGGQYASFMKEIADRSEACKVNPPVLRITAVVPEEYAVESRLIKENLFQFAQELKIEFRIEFVLIPTFEVLSFKAVKFIDGEKTAVNISPAIFRRLGTTNNIAGFFCDLRRISPQVVVFVDGEGWTDSGATSFNRNFINGLEFYTAMLESLDAGGAGAGGDWVRKIEMSLIQPKIFAAVGDVGRRVTAWRELFSGAGLGQVQWSQFAESQAECLLGKSQVRGFHVAKRQAEMLLCWHGKPLVATSAWRWL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1095 538 MobiDBLite consensus disorder prediction 1 26 - -
Vvi4g1095 538 MobiDBLite consensus disorder prediction 7 26 - -
Vvi4g1095 538 Pfam GRAS domain family 176 536 IPR005202 -
Vvi4g1095 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 174 532 IPR005202 -
Vvi4g1095 538 ProSiteProfiles GRAS family profile. 166 536 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1095 Vvi-Chr4 17877896 17879512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1095 85 537 GRAS Transcription Factor Family AT4G36710 53.404 3.78e-150 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi4g1095 GRAS 6.1e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1095 - - vvi:100251313 1077.39